RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1020641" and tax_clade = "Cyanobacteriota/Melainabacteria group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 2 ✖

bioproject 1

  • PRJNA1020641 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2710939 2710939 PRJNA1020641_P_NODE_5963_length_249_cov_0.875000_g5920_i0 PRJNA1020641 5963 249 0.875 2.17875 cyanobacterium NIES-2125 2510788 Bacteria Bacteria 377 3.27e-100   NTclustered gi|1566846232|dbj|LC455610.1| 2510788 g5920 i0 94.024 169.401606425703 251 11 100 4 1 249 547 299 Cyanobacterium NIES-2125 gene for 23S ribosomal RNA, partial sequence blastn 42181 377 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         cyanobacterium NIES-2125
23112861 23112861 PRJNA1020641_P_NODE_2839_length_364_cov_1.003436_g2796_i0 PRJNA1020641 2839 364 1.003436 3.65250704 Synechococcus sp. CBW1107 2789857 Bacteria Bacteria 52.8 0.035   NTclustered gi|2638498304|emb|OY986430.1| 2789857 g2796 i0 100 0.0769230769230769 28 0 8 0 103 130 401398 401425 Synechococcus sp. CBW1107 isolate KAC_114 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. CBW1107

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;