RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1016321" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA1016321 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
159940 159940 PRJNA1016321_P_NODE_53881_length_244_cov_0.900585_g53650_i0 PRJNA1016321 53881 244 0.900585 2.1974274 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 1619070 Bacteria Bacteria 198 2.67e-46   NTclustered gi|837350690|gb|CP011211.1| 1619070 g53650 i0 84.314 2.82786885245902 204 30 83 2 22 224 737430 737228 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17, complete genome blastn 690 198 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
10363042 10363042 PRJNA1016321_P_NODE_47329_length_252_cov_1.608939_g47098_i0 PRJNA1016321 47329 252 1.608939 4.05452628 Candidatus Nanosynbacter sp. HMT-348_TM7c-JB 2933970 Bacteria Bacteria 261 3.49e-65   NTclustered gi|2179907571|gb|CP090820.1| 2933970 g47098 i0 99.306 21.7857142857143 144 1 57 0 109 252 136427 136284 MAG: Candidatus Nanosynbacter sp. HMT-348_TM7c-JB isolate JCVI_32_bin.19 chromosome, complete genome blastn 5490 261 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. HMT-348_TM7c-JB
10363217 10363217 PRJNA1016321_P_NODE_56649_length_239_cov_2.674699_g56418_i0 PRJNA1016321 56649 239 2.674699 6.39253061 TM7 phylum sp. oral taxon 349 713051 Bacteria Bacteria 399 6.659999999999999e-107   NTclustered gi|2028829559|gb|CP072328.1| 713051 g56418 i0 99.543 1.60251046025105 219 1 92 0 1 219 612776 612994 TM7 phylum sp. oral taxon 349 strain PM007 chromosome, complete genome blastn 383 399 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 349
23112225 23112225 PRJNA1016321_P_NODE_52219_length_246_cov_0.890173_g51988_i0 PRJNA1016321 52219 246 0.890173 2.18982558 Candidatus Daviesbacteria bacterium 2053542 Bacteria Bacteria 89.8 1.69e-13   NTclustered gi|1950811978|gb|CP066688.1| 2053542 g51988 i0 93.443 78.1910569105691 61 3 24 1 118 177 498003 497943 MAG: Candidatus Daviesbacteria bacterium isolate NC_groundwater_497_Ag_S-0.1um_39_22 chromosome blastn 19235 89.8 1 Bacteria Bacteria candidate phyla   Candidatus Daviesiibacteriota         Candidatus Daviesbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;