RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1013345" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1013345 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
158403 158403 PRJNA1013345_P_NODE_29821_length_159_cov_0.910714_g29691_i0 PRJNA1013345 29821 159 0.910714 1.44803526 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 95.3 2.16e-15   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g29691 i0 84.946 43.1006289308176 93 14 58 0 67 159 2569510 2569418 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 6853 95.3 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
14186990 14186990 PRJNA1013345_P_NODE_28352_length_160_cov_1.699115_g28222_i0 PRJNA1013345 28352 160 1.699115 2.718584 Chloroflexota bacterium 2026724 Bacteria Bacteria 128 2.14e-25   NTclustered gi|2621702192|emb|OY760183.1| 2026724 g28222 i0 81.529 23.90625 157 27 98 2 1 156 893316 893161 MAG: Chloroflexota bacterium isolate 1e5240b1-722b-4dd6-bc08-6f4f73fd4587 genome assembly, chromosome: 1 blastn 3825 128 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;