RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1013345" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1013345 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20559380 20559380 PRJNA1013345_P_NODE_17717_length_176_cov_2.589147_g17587_i0 PRJNA1013345 17717 176 2.589147 4.55689872 Urbifossiella limnaea 2528023 Bacteria Bacteria 108 3.12e-19   NTclustered gi|1712585314|gb|CP036273.1| 2528023 g17587 i0 77.966 3.9375 177 35 99 4 2 176 3436227 3436053 Urbifossiella limnaea strain ETA_A1 chromosome, complete genome blastn 693 108 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella limnaea
20559483 20559483 PRJNA1013345_P_NODE_23157_length_165_cov_1.618644_g23027_i0 PRJNA1013345 23157 165 1.618644 2.6707626 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 196 6.02e-46   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g23027 i0 95.161 101.927272727273 124 6 75 0 42 165 7051647 7051524 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 16818 196 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
20559717 20559717 PRJNA1013345_P_NODE_6637_length_240_cov_1.875648_g6507_i0 PRJNA1013345 6637 240 1.875648 4.5015552 Akkermansia glycaniphila 1679444 Bacteria Bacteria 198 2.62e-46   NTclustered gi|1093279401|emb|LT629973.1| 1679444 g6507 i0 82.203 4.07083333333333 236 36 97 3 3 235 970681 970913 Akkermansia glycaniphila isolate APytT genome assembly, chromosome: I blastn 977 198 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia glycaniphila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;