RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1012699" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 6 ✖

bioproject 1

  • PRJNA1012699 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1432842 1432842 PRJNA1012699_P_NODE_3062_length_249_cov_1.761364_g3030_i0 PRJNA1012699 3062 249 1.761364 4.38579636 Rhynchobodo ATCC50359 51334 Euglenozoa other_Eukaryota 407 4.1799999999999994e-109   NTclustered gi|2267233|gb|U67184.1|U67184 51334 g3030 i0 96.386 143.935742971888 249 6 99 3 2 249 417 663 Rhynchobodo ATCC50359 large subunit ribosomal RNA gene, partial sequence blastn 35840 407 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Rhynchobodo Rhynchobodo ATCC50359
2708376 2708376 PRJNA1012699_P_NODE_3923_length_242_cov_2.295858_g3891_i0 PRJNA1012699 3923 242 2.295858 5.55597636 Neobodo designis 312471 Euglenozoa other_Eukaryota 444 3.08e-120   NTclustered gi|116222222|gb|DQ980497.1| 312471 g3891 i0 100 102.020661157025 240 0 99 0 2 241 362 601 Neobodo designis clone ndtua1 alpha tubulin gene, partial cds blastn 24689 444 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
5260856 5260856 PRJNA1012699_P_NODE_1565_length_304_cov_1.303030_g1533_i0 PRJNA1012699 1565 304 1.30303 3.9612112 Porcisia hertigi 2761500 Euglenozoa other_Eukaryota 209 1.59e-49   NTclustered gi|2794848421|ref|XM_067897202.1| 2761500 g1533 i0 81.132 12.4243421052632 265 46 87 4 26 288 461 199 Porcisia hertigi uncharacterized protein (JKF63_01154), partial mRNA blastn 3777 209 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Porcisia Porcisia hertigi
10361256 10361256 PRJNA1012699_P_NODE_2609_length_254_cov_1.281768_g2577_i0 PRJNA1012699 2609 254 1.281768 3.25569072 Leishmania martiniquensis 1580590 Euglenozoa other_Eukaryota 152 2.2099999999999998e-32   NTclustered gi|2787673234|ref|XM_067324684.1| 1580590 g2577 i0 77.821 11.4566929133858 257 49 99 6 2 254 724 472 Leishmania martiniquensis uncharacterized protein (LSCM1_07309), partial mRNA blastn 2910 152 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania martiniquensis
12481265 12481265 PRJNA1012699_P_NODE_1690_length_295_cov_1.396396_g1658_i0 PRJNA1012699 1690 295 1.396396 4.1193682 Leishmania 5658 Euglenozoa other_Eukaryota 198 3.32e-46   NTclustered gi|2794986241|ref|XM_067853970.1| 2802991 g1658 i0 79.239 31.4305084745763 289 56 97 4 7 293 1 287 Leishmania sp. Namibia uncharacterized protein (JIQ42_05862), partial mRNA blastn 9272 198 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania sp. Namibia
18009843 18009843 PRJNA1012699_P_NODE_1775_length_291_cov_2.128440_g1743_i0 PRJNA1012699 1775 291 2.12844 6.1937604 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 322 1.86e-83   NTclustered gi|1002462470|ref|XM_015797146.1| 157538 g1743 i0 87.324 18.6288659793814 284 33 97 3 1 282 738 456 Leptomonas pyrrhocoris putative 60S ribosomal protein L7 mRNA blastn 5421 322 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;