RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1011844" and tax_phylum = "Xenacoelomorpha"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Xenacoelomorpha · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1011844 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7808329 7808329 PRJNA1011844_P_NODE_110727_length_301_cov_1.758772_g102152_i0 PRJNA1011844 110727 301 1.758772 5.29390372 Archaphanostoma macrospiriferum 996718 Xenacoelomorpha other_Eukaryota 62.1 4.65e-5   NTclustered gi|766626975|gb|KM527276.1| 996718 g102152 i0 73.41 1.14950166112957 173 43 57 2 84 256 2542 2711 Archaphanostoma macrospiriferum voucher 13-240 28S ribosomal RNA gene, partial sequence blastn 346 62.1 1 Eukaryota Opisthokonta Metazoa Xenacoelomorpha   Acoela Isodiametridae Archaphanostoma Archaphanostoma macrospiriferum
7809015 7809015 PRJNA1011844_P_NODE_168327_length_231_cov_2.468354_g159746_i0 PRJNA1011844 168327 231 2.468354 5.70189774 Symsagittifera roscoffensis 84072 Xenacoelomorpha other_Eukaryota 52.8 0.021   NTclustered gi|2701326651|ref|XM_063857589.1| 84072 g159746 i0 96.774 0.134199134199134 31 1 13 0 159 189 2299 2269 PREDICTED: Symsagittifera roscoffensis recQ-like DNA helicase BLM (LOC134841557), mRNA blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Xenacoelomorpha   Acoela Sagittiferidae Symsagittifera Symsagittifera roscoffensis
15458791 15458791 PRJNA1011844_P_NODE_140693_length_256_cov_5.158470_g132115_i0 PRJNA1011844 140693 256 5.15847 13.2056832 Isodiametra pulchra 504439 Xenacoelomorpha other_Eukaryota 148 2.89e-31   NTclustered gi|1721808271|gb|MN101619.1| 504439 g132115 i0 80.095 16.11328125 211 32 80 8 44 249 218 423 Isodiametra pulchra V-type proton ATPase subunit B mRNA, partial cds blastn 4125 148 1 Eukaryota Opisthokonta Metazoa Xenacoelomorpha   Acoela Isodiametridae Isodiametra Isodiametra pulchra

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;