contig_metadata
17 rows where analysis = "blastn", bioproject = "PRJNA1011844" and tax_phylum = "Verrucomicrobiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1001907 | 1001907 | PRJNA1011844_P_NODE_145581_length_251_cov_1.887640_g137002_i0 | PRJNA1011844 | 145581 | 251 | 1.88764 | 4.7379764 | Verrucomicrobiota | 74201 | Bacteria | Bacteria | 303 | 5.69e-78 | NTclustered | gi|183579829|emb|AM905426.1| | 320771 | g137002 | i0 | 89.627 | 45.1792828685259 | 241 | 22 | 96 | 3 | 2 | 242 | 2292 | 2055 | Bacterium Ellin514 23S rRNA gene, isolate Ellin514 | blastn | 11340 | 303 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Pedosphaerae | Pedosphaerales | Pedosphaeraceae | Pedosphaera | Pedosphaera parvula | |
| 5258846 | 5258846 | PRJNA1011844_P_NODE_124865_length_276_cov_4.448276_g116288_i0 | PRJNA1011844 | 124865 | 276 | 4.448276 | 12.27724176 | Opitutaceae bacterium TAV5 | 794903 | Bacteria | Bacteria | 56.5 | 0.002 | NTclustered | gi|573471959|gb|CP007053.1| | 794903 | g116288 | i0 | 92.5 | 0.246376811594203 | 40 | 2 | 14 | 1 | 137 | 175 | 4227024 | 4226985 | Opitutaceae bacterium TAV5, complete genome | blastn | 68 | 56.5 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutaceae bacterium TAV5 | ||
| 6105067 | 6105067 | PRJNA1011844_P_NODE_140805_length_256_cov_3.393443_g132227_i0 | PRJNA1011844 | 140805 | 256 | 3.393443 | 8.68721408 | Verrucomicrobiota | 74201 | Bacteria | Bacteria | 322 | 1.61e-83 | NTclustered | gi|470483113|ref|NR_076574.1| | 107709 | g132227 | i0 | 92.478 | 198.05859375 | 226 | 16 | 88 | 1 | 29 | 254 | 1618 | 1842 | Opitutus terrae strain PB90-1 23S ribosomal RNA gene, complete sequence | blastn | 50703 | 324 | 0.993827160493827 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus terrae | |
| 6534564 | 6534564 | PRJNA1011844_P_NODE_159566_length_242_cov_1.568047_g150986_i0 | PRJNA1011844 | 159566 | 242 | 1.568047 | 3.79467374 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 202 | 2.0499999999999998e-47 | NTclustered | gi|2874253779|emb|OY969763.1| | 412056 | g150986 | i0 | 83.784 | 30.4090909090909 | 222 | 27 | 90 | 7 | 4 | 221 | 3832288 | 3832504 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 | blastn | 7359 | 202 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 7808495 | 7808495 | PRJNA1011844_P_NODE_125267_length_276_cov_1.438424_g116690_i0 | PRJNA1011844 | 125267 | 276 | 1.438424 | 3.97005024 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 267 | 8.33e-67 | NTclustered | gi|2874253952|emb|OY970277.1| | 412056 | g116690 | i0 | 87.5 | 170.210144927536 | 232 | 28 | 84 | 1 | 46 | 276 | 2751068 | 2750837 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 | blastn | 46978 | 267 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 7809719 | 7809719 | PRJNA1011844_P_NODE_42147_length_730_cov_2.876712_g34241_i0 | PRJNA1011844 | 42147 | 730 | 2.876712 | 20.9999976 | Luteolibacter sp. SL250 | 2995170 | Bacteria | Bacteria | 706 | 0 | NTclustered | gi|2381117106|gb|CP113054.1| | 2995170 | g34241 | i0 | 84.658 | 279.649315068493 | 730 | 88 | 99 | 21 | 1 | 722 | 4718245 | 4718958 | Luteolibacter sp. SL250 chromosome | blastn | 204144 | 706 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter sp. SL250 | |
| 8655097 | 8655097 | PRJNA1011844_P_NODE_151267_length_247_cov_2.632184_g142688_i0 | PRJNA1011844 | 151267 | 247 | 2.632184 | 6.50149448 | Luteolibacter | 518753 | Bacteria | Bacteria | 152 | 2.1399999999999998e-32 | NTclustered | gi|1835317346|gb|CP051774.1| | 2728835 | g142688 | i0 | 87.692 | 37.2672064777328 | 130 | 16 | 53 | 0 | 30 | 159 | 266173 | 266044 | Luteolibacter luteus strain G-1-1-1 chromosome, complete genome | blastn | 9205 | 152 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter luteus | |
| 14184633 | 14184633 | PRJNA1011844_P_NODE_131652_length_267_cov_3.793814_g123074_i0 | PRJNA1011844 | 131652 | 267 | 3.793814 | 10.12948338 | uncultured Verrucomicrobiota bacterium | 156588 | Bacteria | Bacteria | 459 | 1.2299999999999998e-124 | NTclustered | gi|2442650069|gb|OQ422736.1| | 156588 | g123074 | i0 | 99.216 | 93.8277153558052 | 255 | 1 | 95 | 1 | 2 | 255 | 908 | 654 | Uncultured Verrucomicrobia bacterium clone KCM_4_1_112 16S ribosomal RNA gene, partial sequence | blastn | 25052 | 459 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | uncultured Verrucomicrobiota bacterium | |||||
| 15459119 | 15459119 | PRJNA1011844_P_NODE_166293_length_234_cov_2.652174_g157712_i0 | PRJNA1011844 | 166293 | 234 | 2.652174 | 6.20608716 | Oleiharenicola sp. Vm1 | 3398393 | Bacteria | Bacteria | 374 | 3.94e-99 | NTclustered | gi|2912653302|gb|CP180537.1| | 3398393 | g157712 | i0 | 98.14 | 153.735042735043 | 215 | 3 | 92 | 1 | 9 | 223 | 3556185 | 3556398 | Oleiharenicola sp. Vm1 chromosome, complete genome | blastn | 35974 | 374 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Oleiharenicola | Oleiharenicola sp. Vm1 | |
| 15459437 | 15459437 | PRJNA1011844_P_NODE_24813_length_1095_cov_7.752446_g18908_i0 | PRJNA1011844 | 24813 | 1095 | 7.752446 | 84.889283699999993 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 56.5 | 0.009 | NTclustered | gi|2874253768|emb|OY969715.1| | 412056 | g18908 | i0 | 100 | 0.0547945205479452 | 30 | 0 | 3 | 0 | 61 | 90 | 417619 | 417648 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 | blastn | 60 | 56.5 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 15460022 | 15460022 | PRJNA1011844_P_NODE_55033_length_572_cov_3.028056_g46698_i0 | PRJNA1011844 | 55033 | 572 | 3.028056 | 17.32048032 | Pedosphaera parvula | 1032527 | Bacteria | Bacteria | 730 | 0 | NTclustered | gi|183579829|emb|AM905426.1| | 320771 | g46698 | i0 | 90.248 | 97.5052447552448 | 564 | 47 | 98 | 5 | 13 | 572 | 1459 | 900 | Bacterium Ellin514 23S rRNA gene, isolate Ellin514 | blastn | 55773 | 730 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Pedosphaerae | Pedosphaerales | Pedosphaeraceae | Pedosphaera | Pedosphaera parvula | |
| 16732868 | 16732868 | PRJNA1011844_P_NODE_124434_length_277_cov_1.985294_g115857_i0 | PRJNA1011844 | 124434 | 277 | 1.985294 | 5.49926438 | Methylacidimicrobium sp. B4 | 2796139 | Bacteria | Bacteria | 161 | 4.06e-35 | NTclustered | gi|1999103383|gb|CP066203.1| | 2796139 | g115857 | i0 | 78.599 | 72.072202166065 | 257 | 46 | 91 | 8 | 17 | 269 | 2070483 | 2070734 | Methylacidimicrobium sp. B4 chromosome, complete genome | blastn | 19964 | 161 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Methylacidimicrobium | Methylacidimicrobium sp. B4 | ||||
| 18009739 | 18009739 | PRJNA1011844_P_NODE_94395_length_344_cov_2.929889_g85833_i0 | PRJNA1011844 | 94395 | 344 | 2.929889 | 10.07881816 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 322 | 2.25e-83 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g85833 | i0 | 84.639 | 76.9040697674419 | 332 | 41 | 96 | 6 | 6 | 334 | 1389 | 1065 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 26455 | 322 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 19281780 | 19281780 | PRJNA1011844_P_NODE_147696_length_250_cov_0.870056_g139117_i0 | PRJNA1011844 | 147696 | 250 | 0.870056 | 2.17514 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 54.7 | 0.006 | NTclustered | gi|2874254065|emb|OY970130.1| | 412056 | g139117 | i0 | 96.875 | 0.24 | 32 | 1 | 13 | 0 | 23 | 54 | 2458216 | 2458185 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 | blastn | 60 | 54.7 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 23108424 | 23108424 | PRJNA1011844_P_NODE_138639_length_259_cov_1.543011_g130061_i0 | PRJNA1011844 | 138639 | 259 | 1.543011 | 3.99639849 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 350 | 7.47e-92 | NTclustered | gi|2874253690|emb|OY969416.1| | 412056 | g130061 | i0 | 94.372 | 143.436293436293 | 231 | 7 | 88 | 6 | 30 | 257 | 1315317 | 1315544 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 | blastn | 37150 | 350 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 24381956 | 24381956 | PRJNA1011844_P_NODE_120400_length_283_cov_1.400000_g111823_i0 | PRJNA1011844 | 120400 | 283 | 1.4 | 3.962 | Luteolibacter luteus | 2728835 | Bacteria | Bacteria | 110 | 1.53e-19 | NTclustered | gi|1835317346|gb|CP051774.1| | 2728835 | g111823 | i0 | 88.764 | 124.212014134276 | 89 | 10 | 31 | 0 | 178 | 266 | 3804790 | 3804702 | Luteolibacter luteus strain G-1-1-1 chromosome, complete genome | blastn | 35152 | 110 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter luteus | |
| 25228537 | 25228537 | PRJNA1011844_P_NODE_76480_length_417_cov_1.183140_g67978_i0 | PRJNA1011844 | 76480 | 417 | 1.18314 | 4.9336938 | Opitutaceae | 134623 | Bacteria | Bacteria | 84.2 | 1.42e-11 | NTclustered | gi|226525261|gb|FJ872372.1| | 156588 | g67978 | i0 | 75.132 | 42.3189448441247 | 189 | 41 | 45 | 5 | 60 | 245 | 11481 | 11666 | Uncultured Verrucomicrobia bacterium clone 106 genomic sequence | blastn | 17647 | 84.2 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | uncultured Verrucomicrobiota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;