RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1011844" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1011844 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
157717 157717 PRJNA1011844_P_NODE_78621_length_406_cov_5.105105_g70108_i0 PRJNA1011844 78621 406 5.105105 20.7267263 Syntrophobacter fumaroxidans 119484 Bacteria Bacteria 52.8 0.039   NTclustered gi|116696516|gb|CP000478.1| 335543 g70108 i0 100 0.0689655172413793 28 0 7 0 191 218 4772203 4772176 Syntrophobacter fumaroxidans MPOB, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Syntrophobacter Syntrophobacter fumaroxidans
12911299 12911299 PRJNA1011844_P_NODE_77471_length_411_cov_25.902367_g68966_i0 PRJNA1011844 77471 411 25.902367 106.45872837 Desulfovibrio desulfuricans 876 Bacteria Bacteria 54.7 0.011   NTclustered gi|2884834435|gb|CP176628.1| 876 g68966 i0 100 0.236009732360097 29 0 7 0 93 121 2624093 2624121 Desulfovibrio desulfuricans strain SFAD67 chromosome, complete genome blastn 97 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
18009719 18009719 PRJNA1011844_P_NODE_93055_length_348_cov_4.541818_g84496_i0 PRJNA1011844 93055 348 4.541818 15.80552664 Salidesulfovibrio onnuriiensis 2583823 Bacteria Bacteria 60.2 1.97e-4   NTclustered gi|1725298512|gb|CP040751.1| 2583823 g84496 i0 100 0.252873563218391 32 0 9 0 11 42 3118559 3118590 Salidesulfovibrio onnuriiensis strain IOR2 chromosome, complete genome blastn 88 60.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Salidesulfovibrio Salidesulfovibrio onnuriiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;