RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1011844" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1011844 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
156468 156468 PRJNA1011844_P_NODE_163781_length_238_cov_2.278788_g155200_i0 PRJNA1011844 163781 238 2.278788 5.42351544 Mesorhabditis longespiculosa 473162 Nematoda Nematoda 311 3.19e-80   NTclustered gi|158821916|gb|EU195980.1| 473162 g155200 i0 92.308 40.8991596638655 221 13 93 2 6 226 2118 1902 Mesorhabditis longespiculosa strain DF5017 28S ribosomal RNA gene, partial sequence blastn 9734 311 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis longespiculosa
3552550 3552550 PRJNA1011844_P_NODE_157003_length_244_cov_0.900585_g148423_i0 PRJNA1011844 157003 244 0.900585 2.1974274 Panagrellus 6232 Nematoda Nematoda 414 2.44e-111   NTclustered gi|76560670|gb|DQ145695.1| 6233 g148423 i0 100 26.3606557377049 224 0 92 0 13 236 435 658 Panagrellus redivivus 28S ribosomal RNA gene, partial sequence blastn 6432 414 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrellus Panagrellus redivivus
3982159 3982159 PRJNA1011844_P_NODE_106384_length_310_cov_3.261603_g97811_i0 PRJNA1011844 106384 310 3.261603 10.1109693 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.029   NTclustered gi|1621292|emb|Z81015.1| 6239 g97811 i0 100 0.180645161290323 28 0 9 0 236 263 35760 35787 Caenorhabditis elegans Cosmid C11E4, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
5258932 5258932 PRJNA1011844_P_NODE_131665_length_267_cov_3.654639_g123087_i0 PRJNA1011844 131665 267 3.654639 9.75788613 Pristionchus sp. 3 CZ3975 452810 Nematoda Nematoda 178 3.86e-40   NTclustered gi|150981895|gb|EF634536.1| 452810 g123087 i0 82.075 58.7640449438202 212 34 79 3 52 261 1 210 Pristionchus sp. 3 CZ3975 large subunit ribosomal protein 10 (rpl-10) mRNA, partial cds blastn 15690 178 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 3 CZ3975
12910393 12910393 PRJNA1011844_P_NODE_26011_length_1063_cov_3.010101_g19909_i0 PRJNA1011844 26011 1063 3.010101 31.99737363 Caenorhabditis elegans 6239 Nematoda Nematoda 58.4 0.002   NTclustered gi|1972265951|ref|NM_001268213.4| 6239 g19909 i0 100 0.116650987770461 31 0 3 0 760 790 679 649 Caenorhabditis elegans RRM domain-containing protein (rsp-8), mRNA blastn 124 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
18008372 18008372 PRJNA1011844_P_NODE_177035_length_208_cov_4.385185_g168453_i0 PRJNA1011844 177035 208 4.385185 9.1211848 Necator americanus 51031 Nematoda Nematoda 52.8 0.018   NTclustered gi|2707540478|ref|XM_064182763.1| 51031 g168453 i0 100 0.134615384615385 28 0 13 0 35 62 502 475 Necator americanus uncharacterized protein (RB195_004776), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
20557214 20557214 PRJNA1011844_P_NODE_132397_length_266_cov_4.134715_g123819_i0 PRJNA1011844 132397 266 4.134715 10.9983419 Ancylostoma duodenale 51022 Nematoda Nematoda 62.1 4.04e-5   NTclustered gi|432332372|gb|JQ762420.1| 51022 g123819 i0 93.023 8.91353383458647 43 2 16 1 224 265 813 855 Ancylostoma duodenale beta-actin mRNA, partial cds blastn 2371 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;