RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1011844" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1011844 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9083743 9083743 PRJNA1011844_P_NODE_146048_length_251_cov_0.865169_g137469_i0 PRJNA1011844 146048 251 0.865169 2.17157419 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 259 1.25e-64   NTclustered gi|2874253978|emb|OY970303.1| 412054 g137469 i0 86.441 18.9641434262948 236 32 94 0 15 250 8348398 8348633 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 4760 259 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
12909878 12909878 PRJNA1011844_P_NODE_150791_length_248_cov_0.880000_g142212_i0 PRJNA1011844 150791 248 0.88 2.1824 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 224 4.489999999999999e-54   NTclustered gi|2874253789|emb|OY969773.1| 412054 g142212 i0 87.065 21.1532258064516 201 22 83 4 42 240 421037 421235 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 5246 224 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
20557649 20557649 PRJNA1011844_P_NODE_167377_length_232_cov_4.062893_g158796_i0 PRJNA1011844 167377 232 4.062893 9.42591176 Longimicrobiales bacterium 2910168 Bacteria Bacteria 52.8 0.021   NTclustered gi|2621703510|emb|OY762557.1| 2910168 g158796 i0 100 0.120689655172414 28 0 12 0 167 194 2248123 2248096 MAG: Longimicrobiales bacterium isolate c10e2151-7d97-4465-9cf7-a78a4796a63d genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
21834671 21834671 PRJNA1011844_P_NODE_87138_length_370_cov_1.232323_g78587_i0 PRJNA1011844 87138 370 1.232323 4.5595951 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 536 7.959999999999999e-148   NTclustered gi|2874253789|emb|OY969773.1| 412054 g78587 i0 93.872 114.883783783784 359 16 96 4 14 370 421815 422169 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 42507 536 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
24381948 24381948 PRJNA1011844_P_NODE_11980_length_1647_cov_8.620076_g8649_i0 PRJNA1011844 11980 1647 8.620076 141.97265172 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 54.7 0.047   NTclustered gi|2874253789|emb|OY969773.1| 412054 g8649 i0 100 0.0176077717061324 29 0 2 0 113 141 1488180 1488208 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;