RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1011844" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1011844 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1430494 1430494 PRJNA1011844_P_NODE_106962_length_310_cov_2.101266_g98389_i0 PRJNA1011844 106962 310 2.101266 6.5139246 Batrachochytrium dendrobatidis 109871 Fungi Fungi 52.8 0.029   NTclustered gi|575484183|ref|XM_006681323.1| 684364 g98389 i0 96.774 0.1 31 1 10 0 60 90 926 896 Batrachochytrium dendrobatidis JAM81 uncharacterized protein (BATDEDRAFT_27121), partial mRNA blastn 31 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
11634737 11634737 PRJNA1011844_P_NODE_141730_length_255_cov_2.906593_g133152_i0 PRJNA1011844 141730 255 2.906593 7.41181215 Polychytrium aggregatum 110093 Fungi Fungi 126 1.35e-24   NTclustered gi|2432131463|ref|XM_053113103.1| 110093 g133152 i0 81.013 47.3803921568627 158 30 62 0 3 160 209 52 Polychytrium aggregatum translation protein SH3-like domain-containing protein (BJ171DRAFT_557634), partial mRNA blastn 12082 126 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
14186404 14186404 PRJNA1011844_P_NODE_84372_length_380_cov_35.427007_g75827_i0 PRJNA1011844 84372 380 35.427007 134.6226266 Polychytrium aggregatum 110093 Fungi Fungi 63.9 1.67e-5   NTclustered gi|2432173474|ref|XM_053112692.1| 110093 g75827 i0 100 0.836842105263158 34 0 9 0 327 360 48 15 Polychytrium aggregatum phosphoribosylglycinamide formyltransferase (BJ171DRAFT_528209), mRNA blastn 318 63.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
15029683 15029683 PRJNA1011844_P_NODE_148752_length_249_cov_1.409091_g140173_i0 PRJNA1011844 148752 249 1.409091 3.50863659 Fungi 4751 Fungi Fungi 86.1 2.22e-12   NTclustered gi|1866582795|gb|MT730970.1| 4814 g140173 i0 94.643 23.6144578313253 56 2 22 1 2 57 4495 4441 Chytriomyces hyalinus isolate PLAUS Ob-1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5880 86.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces hyalinus
18009619 18009619 PRJNA1011844_P_NODE_85515_length_376_cov_2.184818_g76969_i0 PRJNA1011844 85515 376 2.184818 8.21491568 Polychytrium aggregatum 110093 Fungi Fungi 183 1.22e-41   NTclustered gi|2432142886|ref|XM_053110559.1| 110093 g76969 i0 79.078 48.2047872340426 282 47 73 8 55 330 62 337 Polychytrium aggregatum 60S ribosomal protein L42 (BJ171DRAFT_500193), mRNA blastn 18125 183 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
23110164 23110164 PRJNA1011844_P_NODE_88939_length_363_cov_2.175862_g80385_i0 PRJNA1011844 88939 363 2.175862 7.89837906 Fimicolochytrium jonesii 1396493 Fungi Fungi 52.8 0.034   NTclustered gi|2432074143|ref|XM_053070243.1| 1396493 g80385 i0 100 0.0771349862258953 28 0 8 0 203 230 266 239 Fimicolochytrium jonesii cytochrome c oxidase, subunit VIb (EV422DRAFT_527999), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;