RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1011844" and tax_phylum = "Brachiopoda"

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tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1011844 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5259634 5259634 PRJNA1011844_P_NODE_24025_length_1119_cov_6.498088_g18237_i0 PRJNA1011844 24025 1119 6.498088 72.71360472 Lingula anatina 7574 Brachiopoda other_Eukaryota 54.7 0.032   NTclustered gi|919053714|ref|XM_013553342.1| 7574 g18237 i0 100 0.0259159964253798 29 0 3 0 541 569 2214 2186 PREDICTED: Lingula anatina optineurin (LOC106172566), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
16734877 16734877 PRJNA1011844_P_NODE_94574_length_343_cov_6.588889_g86012_i0 PRJNA1011844 94574 343 6.588889 22.59988927 Lingula anatina 7574 Brachiopoda other_Eukaryota 196 1.42e-45   NTclustered gi|919069159|ref|XM_013560604.1| 7574 g86012 i0 84.422 59.5801749271137 199 31 58 0 128 326 563 365 PREDICTED: Lingula anatina histone H2A (LOC106177742), mRNA blastn 20436 196 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
23109754 23109754 PRJNA1011844_P_NODE_58719_length_538_cov_2.870968_g50341_i0 PRJNA1011844 58719 538 2.870968 15.44580784 Lingula anatina 7574 Brachiopoda other_Eukaryota 220 1.37e-52   NTclustered gi|919069159|ref|XM_013560604.1| 7574 g50341 i0 81.159 28.9089219330855 276 50 51 2 120 394 563 289 PREDICTED: Lingula anatina histone H2A (LOC106177742), mRNA blastn 15553 220 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;