RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1011844" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1011844 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11635373 11635373 PRJNA1011844_P_NODE_26390_length_1051_cov_272.632924_g20224_i0 PRJNA1011844 26390 1051 272.632924 2865.37203124 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 425 5.4599999999999996e-114   NTclustered gi|657012367|gb|KF302531.1| 2850 g20224 i0 87.071 52.5442435775452 379 46 36 3 302 679 17 393 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 55224 425 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
23108920 23108920 PRJNA1011844_P_NODE_179319_length_201_cov_4.492188_g170737_i0 PRJNA1011844 179319 201 4.492188 9.02929788 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.04e-4   NTclustered gi|224009701|ref|XM_002293773.1| 296543 g170737 i0 97.143 0.174129353233831 35 1 17 0 45 79 152 118 Thalassiosira pseudonana CCMP1335 RS25, ribosomal protein 25 40S small ribosomal subunit (RS25), mRNA blastn 35 60.2 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;