RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1011844" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 2 ✖

bioproject 1

  • PRJNA1011844 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15029603 15029603 PRJNA1011844_P_NODE_136812_length_261_cov_1.845745_g128234_i0 PRJNA1011844 136812 261 1.845745 4.81739445 root 1 Root_unresolved Root_unresolved 440 4.3499999999999984e-119   NTclustered gi|325984387|gb|JF262284.1| 29281 g128234 i0 98.4 95.7854406130268 250 4 96 0 12 261 154 403 Uncultured crenarchaeote clone YLA147 16S ribosomal RNA gene, partial sequence blastn 25000 440 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
16732992 16732992 PRJNA1011844_P_NODE_133994_length_264_cov_3.759162_g125416_i0 PRJNA1011844 133994 264 3.759162 9.92418768 Candidatus Nitrosotenuis aquarius 1846278 Archaea Archaea 436 5.7e-118   NTclustered gi|1279207014|gb|CP024808.1| 1846278 g125416 i0 98.024 74.405303030303 253 2 95 2 13 264 293582 293832 Candidatus Nitrosotenuis aquarius strain AQ6F chromosome, complete genome blastn 19643 436 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis aquarius

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;