RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1011844" and tax_clade = "delta/epsilon subdivisions"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA1011844 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3982393 3982393 PRJNA1011844_P_NODE_123204_length_279_cov_1.281553_g114627_i0 PRJNA1011844 123204 279 1.281553 3.57553287 uncultured delta proteobacterium 34034 Bacteria Bacteria 473 4.629999999999999e-129   NTclustered gi|511202453|gb|KC994684.1| 34034 g114627 i0 99.614 92.0215053763441 259 1 93 0 14 272 74 332 Uncultured delta proteobacterium clone BF 004 16S ribosomal RNA gene, partial sequence blastn 25674 473 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
6535366 6535366 PRJNA1011844_P_NODE_43106_length_715_cov_8.185358_g35144_i0 PRJNA1011844 43106 715 8.185358 58.5253097 Bradymonas sediminis 1548548 Bacteria Bacteria 54.7 0.02   NTclustered gi|1406952946|gb|CP030032.1| 1548548 g35144 i0 100 0.0405594405594406 29 0 4 0 117 145 841354 841382 Bradymonas sediminis strain FA350 chromosome, complete genome blastn 29 54.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis
16304244 16304244 PRJNA1011844_P_NODE_116793_length_288_cov_4.520930_g108217_i0 PRJNA1011844 116793 288 4.52093 13.0202784 Myxococcota 2818505 Bacteria Bacteria 243 1.47e-59   NTclustered gi|253317382|gb|GQ249356.1| 34034 g108217 i0 97.887 67.5729166666667 142 0 89 3 139 279 1334 1195 Uncultured delta proteobacterium clone A8 16S ribosomal RNA gene, partial sequence blastn 19461 243 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;