RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1011833" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1011833 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6533555 6533555 PRJNA1011833_S_NODE_32526_length_206_cov_1.110429_g32106_i0 PRJNA1011833 32526 206 1.110429 2.28748374 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 267 5.91e-67   NTclustered gi|1124902734|gb|AY812498.2| 6182 g32106 i0 99.32 81.7330097087379 147 1 95 0 1 147 976 1122 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 16837 267 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
9082805 9082805 PRJNA1011833_S_NODE_10588_length_362_cov_2.567398_g10170_i0 PRJNA1011833 10588 362 2.567398 9.29398076 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 183 1.17e-41   NTclustered gi|21308046|gb|AY067413.1| 79327 g10170 i0 86.047 39.975138121547 172 22 47 2 190 360 205 35 Schmidtea mediterranea clone H.61.1b(T3) unknown mRNA sequence blastn 14471 183 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;