RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1011833" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1011833 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3982006 3982006 PRJNA1011833_S_NODE_7404_length_412_cov_2.861789_g6988_i0 PRJNA1011833 7404 412 2.861789 11.79057068 Spring viraemia of carp virus 696863 Viruses Viruses 723 0   NTclustered gi|165940616|gb|EU370915.1| 696863 g6988 i0 100 48.3009708737864 391 0 95 0 1 391 1431 1821 Spring viremia of carp virus isolate 0504 glycoprotein (G) gene, complete cds blastn 19900 723 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
5258224 5258224 PRJNA1011833_S_NODE_18825_length_279_cov_1.758475_g18405_i0 PRJNA1011833 18825 279 1.758475 4.90614525 Spring viraemia of carp virus 696863 Viruses Viruses 516 7.58e-142   NTclustered gi|89280756|gb|DQ097384.2| 696863 g18405 i0 100 20 279 0 100 0 1 279 10707 10985 Spring viraemia of carp virus isolate A1, complete genome blastn 5580 516 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
6533522 6533522 PRJNA1011833_S_NODE_26426_length_231_cov_1.276596_g26006_i0 PRJNA1011833 26426 231 1.276596 2.94893676 Spring viraemia of carp virus 696863 Viruses Viruses 422 1.37e-113   NTclustered gi|124699170|gb|DQ916051.1| 696863 g26006 i0 99.567 49.7402597402597 231 1 100 0 1 231 462 232 Spring viremia of carp virus strain 980619 phosphoprotein (P) gene, complete cds blastn 11490 422 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
10358537 10358537 PRJNA1011833_S_NODE_35429_length_196_cov_2.509804_g35009_i0 PRJNA1011833 35429 196 2.509804 4.91921584 Spring viraemia of carp virus 696863 Viruses Viruses 331 1.94e-86   NTclustered gi|2490825611|gb|OP495631.1| 696863 g35009 i0 98.404 20.1377551020408 188 3 96 0 9 196 555 368 Sprivivirus cyprinus isolate SVCV_2022, complete genome blastn 3947 331 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
11634145 11634145 PRJNA1011833_S_NODE_6090_length_439_cov_10.704545_g5677_i0 PRJNA1011833 6090 439 10.704545 46.99295255 Spring viraemia of carp virus 696863 Viruses Viruses 778 0   NTclustered gi|387273543|gb|JQ666283.1| 696863 g5677 i0 98.633 47.3166287015945 439 6 100 0 1 439 396 834 Spring viraemia of carp virus isolate 566087-1 phosphoprotein (P) gene, partial cds; matrix (M) and glycoprotein (G) genes, complete cds; and RNA dependent RNA polymerase (L) gene, partial cds blastn 20772 778 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
15458045 15458045 PRJNA1011833_S_NODE_39973_length_184_cov_1.361702_g39553_i0 PRJNA1011833 39973 184 1.361702 2.50553168 Spring viraemia of carp virus 696863 Viruses Viruses 335 1.3899999999999996e-87   NTclustered gi|165940616|gb|EU370915.1| 696863 g39553 i0 99.457 64.695652173913 184 1 100 0 1 184 542 359 Spring viremia of carp virus isolate 0504 glycoprotein (G) gene, complete cds blastn 11904 335 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
18007198 18007198 PRJNA1011833_S_NODE_3895_length_504_cov_13.518438_g3495_i0 PRJNA1011833 3895 504 13.518438 68.13292752 Spring viraemia of carp virus 696863 Viruses Viruses 887 0   NTclustered gi|158252063|gb|EU177782.1| 696863 g3495 i0 98.413 30.7440476190476 504 8 100 0 1 504 1389 886 Spring viremia of carp virus isolate BJ0505-2, complete genome blastn 15495 887 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
19280809 19280809 PRJNA1011833_S_NODE_11016_length_356_cov_10.293930_g10597_i0 PRJNA1011833 11016 356 10.29393 36.6463908 Spring viraemia of carp virus 696863 Viruses Viruses 625 1.5799999999999994e-174   NTclustered gi|115503435|gb|DQ916053.1| 696863 g10597 i0 98.315 53.5758426966292 356 6 100 0 1 356 569 924 Spring viremia of carp virus strain OMG067 phosphoprotein (P) gene, complete cds blastn 19073 625 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;