RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1011833" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1011833 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4829618 4829618 PRJNA1011833_S_NODE_57264_length_153_cov_0.872727_g56844_i0 PRJNA1011833 57264 153 0.872727 1.33527231 Corynebacterium 1716 Bacteria Bacteria 283 4.0799999999999995e-72   NTclustered gi|2547420364|gb|CP073093.1| 38304 g56844 i0 100 377.764705882353 153 0 100 0 1 153 293976 294128 Corynebacterium tuberculostearicum strain CTNIH12 chromosome, complete genome blastn 57798 283 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum
16732471 16732471 PRJNA1011833_S_NODE_54534_length_156_cov_1.274336_g54114_i0 PRJNA1011833 54534 156 1.274336 1.98796416 Microbacterium sp. PM5 2014534 Bacteria Bacteria 289 9e-74   NTclustered gi|1419380645|gb|CP022162.1| 2014534 g54114 i0 100 158.00641025641 156 0 100 0 1 156 1408598 1408443 Microbacterium sp. PM5 genome blastn 24649 289 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. PM5
20556524 20556524 PRJNA1011833_S_NODE_25037_length_238_cov_1.451282_g24617_i0 PRJNA1011833 25037 238 1.451282 3.45405116 Cutibacterium modestum 2559073 Bacteria Bacteria 353 5.23e-93   NTclustered gi|1061027374|gb|CP017040.1| 2559073 g24617 i0 94.043 283.445378151261 235 10 98 4 6 238 776437 776205 Cutibacterium modestum strain F0672, complete sequence blastn 67460 353 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium modestum
23953923 23953923 PRJNA1011833_S_NODE_18779_length_279_cov_2.440678_g18359_i0 PRJNA1011833 18779 279 2.440678 6.80949162 Microbacterium 33882 Bacteria Bacteria 510 3.5299999999999996e-140   NTclustered gi|470475773|ref|NR_076300.1| 2033 g18359 i0 99.642 186.372759856631 279 1 100 0 1 279 551 273 Microbacterium testaceum strain StLB037 23S ribosomal RNA gene, complete sequence blastn 51998 510 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium testaceum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;