RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1011833" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1011833 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15458017 15458017 PRJNA1011833_S_NODE_36553_length_193_cov_1.446667_g36133_i0 PRJNA1011833 36553 193 1.446667 2.79206731 Trueperaceae bacterium 2026798 Bacteria Bacteria 296 6.96e-76   NTclustered gi|2621706202|emb|OY764543.1| 2026798 g36133 i0 94.33 657.067357512953 194 10 100 1 1 193 2559416 2559223 MAG: Trueperaceae bacterium isolate 617606ba-ac04-44ed-b980-3de5d93b502e genome assembly, chromosome: 1 blastn 126814 296 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
25227818 25227818 PRJNA1011833_S_NODE_30020_length_215_cov_1.732558_g29600_i0 PRJNA1011833 30020 215 1.732558 3.7249997 Truepera 332248 Bacteria Bacteria 267 6.22e-67   NTclustered gi|2573973991|gb|CP133611.1| 332249 g29600 i0 91.667 336.841860465116 192 16 89 0 24 215 762249 762058 Truepera radiovictrix strain CIP 108686 chromosome, complete genome blastn 72421 267 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;