RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1011833" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1011833 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2705587 2705587 PRJNA1011833_S_NODE_23603_length_246_cov_1.418719_g23183_i0 PRJNA1011833 23603 246 1.418719 3.49004874 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 335 1.9699999999999992e-87   NTclustered gi|2874253811|emb|OY969795.1| 464461 g23183 i0 91.429 105.817073170732 245 19 99 2 1 244 654796 655039 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 26031 335 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
8654728 8654728 PRJNA1011833_S_NODE_51367_length_161_cov_1.779661_g50947_i0 PRJNA1011833 51367 161 1.779661 2.86525421 Parachlamydia 83551 Bacteria Bacteria 198 1.6199999999999999e-46   NTclustered gi|470491594|ref|NR_077046.1| 83552 g50947 i0 90.728 308.031055900621 151 11 94 3 11 161 1514 1367 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 49593 198 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
23953944 23953944 PRJNA1011833_S_NODE_48619_length_166_cov_1.365854_g48199_i0 PRJNA1011833 48619 166 1.365854 2.26731764 Candidatus Piscichlamydia 263177 Bacteria Bacteria 307 2.69e-79   NTclustered gi|985700636|emb|LN995855.1| 263190 g48199 i0 100 97.855421686747 166 0 100 0 1 166 1111 1276 Candidatus Piscichlamydia salmonis partial 16S rRNA gene, clone Trut1-48-2014_Fish_Farm_Eclepens blastn 16244 307 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Piscichlamydiaceae Candidatus Piscichlamydia Candidatus Piscichlamydia salmonis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;