RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1010780" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1010780 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
155195 155195 PRJNA1010780_S_NODE_40901_length_203_cov_2.363095_g39612_i0 PRJNA1010780 40901 203 2.363095 4.79708285 Lycopodina hypogea 2491183 Porifera other_Eukaryota 54.7 0.005   NTclustered gi|2921218|gb|AF026513.1| 2491183 g39612 i0 100 0.142857142857143 29 0 14 0 12 40 228 256 Asbestopluma hypogea heat-shock protein Hsp70 mRNA, partial cds blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Poecilosclerida Cladorhizidae Lycopodina Lycopodina hypogea
15457734 15457734 PRJNA1010780_S_NODE_34813_length_231_cov_5.448980_g33524_i0 PRJNA1010780 34813 231 5.44898 12.5871438 Halichondria panicea 6063 Porifera other_Eukaryota 104 5.62e-18   NTclustered gi|2719025726|ref|XM_064546506.1| 6063 g33524 i0 91.892 1.53246753246753 74 6 32 0 1 74 521 594 PREDICTED: Halichondria panicea calmodulin-beta (LOC135348324), mRNA blastn 354 104 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
18007001 18007001 PRJNA1010780_S_NODE_6195_length_1077_cov_5.854127_g5583_i0 PRJNA1010780 6195 1077 5.854127 63.04894779 Sycon ciliatum 27933 Porifera other_Eukaryota 58.4 0.002   NTclustered gi|2732899589|ref|XM_065321117.1| 27933 g5583 i0 89.583 0.370473537604457 48 2 4 2 1 48 961 1005 PREDICTED: Sycon ciliatum uncharacterized LOC135807024 (LOC135807024), mRNA blastn 399 58.4 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;