RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1010780" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1010780 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3981601 3981601 PRJNA1010780_S_NODE_43924_length_192_cov_2.560510_g42635_i0 PRJNA1010780 43924 192 2.56051 4.9161792 Perofascia lepidii 184465 SAR_Eukaryotes SAR_Eukaryotes 171 4.37e-38   NTclustered gi|93139091|gb|DQ361114.1| 184465 g42635 i0 83.077 91.71875 195 25 99 7 2 192 72 262 Perofascia lepidii strain MG 27-11 beta-tubulin (btub) gene, partial cds blastn 17610 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Perofascia Perofascia lepidii
14183866 14183866 PRJNA1010780_S_NODE_63512_length_150_cov_1.434783_g62223_i0 PRJNA1010780 63512 150 1.434783 2.1521745 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 87.9 3.35e-13   NTclustered gi|669165645|ref|XM_008620163.1| 1156394 g62223 i0 78.676 3.44666666666667 136 25 89 3 15 148 324 191 Saprolegnia diclina VS20 caltractin mRNA blastn 517 87.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
19280729 19280729 PRJNA1010780_S_NODE_52176_length_170_cov_1.422222_g50887_i0 PRJNA1010780 52176 170 1.422222 2.4177774 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 82.4 1.81e-11   NTclustered gi|2794915052|ref|XM_067892681.1| 164328 g50887 i0 89.231 1.04117647058824 65 7 38 0 103 167 2192 2128 Phytophthora ramorum Pyrophosphate-energized vacuolar membrane proton pump (KRP23_7374), partial mRNA blastn 177 82.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;