RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1010780" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1010780 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1429980 1429980 PRJNA1010780_S_NODE_50762_length_173_cov_2.086957_g49473_i0 PRJNA1010780 50762 173 2.086957 3.61043561 Patiria miniata 46514 Echinodermata other_Eukaryota 97.1 6.62e-16   NTclustered gi|1944861630|ref|XM_038196640.1| 46514 g49473 i0 87.805 13.1445086705202 82 10 47 0 57 138 1985 1904 PREDICTED: Patiria miniata dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A (LOC119725278), transcript variant X1, mRNA blastn 2274 97.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
19280770 19280770 PRJNA1010780_S_NODE_6556_length_1043_cov_4.931548_g5892_i0 PRJNA1010780 6556 1043 4.931548 51.43604564 Lytechinus pictus 7653 Echinodermata other_Eukaryota 54.7 0.029   NTclustered gi|2707361884|ref|XM_064107520.1| 7653 g5892 i0 100 0.0278044103547459 29 0 3 0 826 854 648 620 PREDICTED: Lytechinus pictus catenin alpha-2-like (LOC129273516), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;