RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1010780" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1010780 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14183817 14183817 PRJNA1010780_S_NODE_46252_length_185_cov_1.726667_g44963_i0 PRJNA1010780 46252 185 1.726667 3.19433395 Synchytrium microbalum 1806994 Fungi Fungi 207 3.19e-49   NTclustered gi|1759169267|ref|XM_031172234.1| 1806994 g44963 i0 87.027 84.8648648648649 185 22 99 2 2 185 431 248 Synchytrium microbalum uncharacterized protein (SmJEL517_g06308), partial mRNA blastn 15700 207 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
21831968 21831968 PRJNA1010780_S_NODE_48658_length_178_cov_3.013986_g47369_i0 PRJNA1010780 48658 178 3.013986 5.36489508 Synchytrium microbalum 1806994 Fungi Fungi 159 8.629999999999998e-35   NTclustered gi|1759154818|ref|XM_031169817.1| 1806994 g47369 i0 86.093 116.460674157303 151 17 84 4 13 161 902 754 Synchytrium microbalum uncharacterized protein (SmJEL517_g03889), partial mRNA blastn 20730 159 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
23107552 23107552 PRJNA1010780_S_NODE_7039_length_998_cov_6.326064_g6327_i0 PRJNA1010780 7039 998 6.326064 63.13411872 Spizellomyces punctatus 109760 Fungi Fungi 660 0   NTclustered gi|1027028346|ref|XM_016756817.1| 645134 g6327 i0 80.089 86.926853707414807 894 173 89 5 82 973 2143 1253 Spizellomyces punctatus DAOM BR117 ADP,ATP carrier protein 1, mitochondrial, variant (SPPG_08669), partial mRNA blastn 86753 660 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;