RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1010780" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1010780 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9082655 9082655 PRJNA1010780_S_NODE_34388_length_234_cov_1.969849_g33099_i0 PRJNA1010780 34388 234 1.969849 4.60944666 Cryptosporidium parvum 5807 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|66358829|ref|XM_626593.1| 353152 g33099 i0 100 0.123931623931624 29 0 12 0 202 230 119 91 Cryptosporidium parvum Iowa II mitochondrial import inner membrane translocase subunit tim17 (cgd2_4140) mRNA, partial cds blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum
15029276 15029276 PRJNA1010780_S_NODE_12772_length_628_cov_14.922428_g11661_i0 PRJNA1010780 12772 628 14.922428 93.71284784 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.005   NTclustered gi|1976647301|ref|XM_039113669.1| 5851 g11661 i0 100 0.46656050955414 30 0 5 0 566 595 1383 1354 Plasmodium knowlesi strain H phospholipid-transporting ATPase, putative (PKNH_1442600), partial mRNA blastn 293 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium knowlesi
18006859 18006859 PRJNA1010780_S_NODE_24555_length_323_cov_2.194444_g23266_i0 PRJNA1010780 24555 323 2.194444 7.08805412 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.03   NTclustered gi|1620150941|ref|XM_028678858.1| 85471 g23266 i0 100 0.086687306501548 28 0 9 0 291 318 1932 1905 Plasmodium relictum liver specific protein 1, putative (LISP1), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
19280736 19280736 PRJNA1010780_S_NODE_54156_length_166_cov_1.114504_g52867_i0 PRJNA1010780 54156 166 1.114504 1.85007664 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|1620150730|ref|XM_028678741.1| 85471 g52867 i0 96.875 0.192771084337349 32 1 19 0 83 114 27 58 Plasmodium relictum plasmepsin IX, putative (PRELSG_1320900), partial mRNA blastn 32 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
23107497 23107497 PRJNA1010780_S_NODE_52939_length_168_cov_1.939850_g51650_i0 PRJNA1010780 52939 168 1.93985 3.258948 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.014   NTclustered gi|1620113582|ref|XM_028675172.1| 5849 g51650 i0 96.875 0.19047619047619 32 0 18 1 3 33 1466 1497 Plasmodium gallinaceum hypothetical protein (PGAL8A_00161700), partial mRNA blastn 32 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
23953852 23953852 PRJNA1010780_S_NODE_12919_length_622_cov_14.609881_g11799_i0 PRJNA1010780 12919 622 14.609881 90.87345982 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.005   NTclustered gi|1976647301|ref|XM_039113669.1| 5851 g11799 i0 100 0.471061093247588 30 0 5 0 560 589 1383 1354 Plasmodium knowlesi strain H phospholipid-transporting ATPase, putative (PKNH_1442600), partial mRNA blastn 293 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium knowlesi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;