RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1010780" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA1010780 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13754950 13754950 PRJNA1010780_S_NODE_51531_length_171_cov_2.404412_g50242_i0 PRJNA1010780 51531 171 2.404412 4.11154452 Eukaryota 2759 Plants Plants 311 2.14e-80   NTclustered gi|1201359271|gb|MF040793.1| 3078 g50242 i0 99.415 80.7251461988304 171 1 100 0 1 171 1579 1749 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 13804 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
15457669 15457669 PRJNA1010780_S_NODE_19693_length_409_cov_2.681818_g18405_i0 PRJNA1010780 19693 409 2.681818 10.96863562 Chlamydomonas reinhardtii 3055 Plants Plants 226 2.19e-54   NTclustered gi|2082238142|ref|XM_043059158.1| 3055 g18405 i0 81.429 4.05134474327628 280 48 68 4 3 280 1189 1466 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g076350v5), mRNA blastn 1657 226 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18006854 18006854 PRJNA1010780_S_NODE_23655_length_335_cov_4.086667_g22366_i0 PRJNA1010780 23655 335 4.086667 13.69033445 Auxenochlorella protothecoides 3075 Plants Plants 80.5 1.45e-10   NTclustered gi|760449020|ref|XM_011403277.1| 3075 g22366 i0 95.918 0.435820895522388 49 2 15 0 287 335 714 666 Auxenochlorella protothecoides putative histone H2A variant 3 partial mRNA blastn 146 80.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
18006966 18006966 PRJNA1010780_S_NODE_53255_length_167_cov_4.333333_g51966_i0 PRJNA1010780 53255 167 4.333333 7.23666611 Auxenochlorella pyrenoidosa 3078 Plants Plants 309 7.53e-80   NTclustered gi|1201359271|gb|MF040793.1| 3078 g51966 i0 100 100.77245508982 167 0 100 0 1 167 376 542 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 16829 309 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;