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contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA1010662" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA1010662 · 17 ✖

analysis 1

  • blastn · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1001447 1001447 PRJNA1010662_P_NODE_8861_length_192_cov_2.601399_g8802_i0 PRJNA1010662 8861 192 2.601399 4.99468608 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 204 4.31e-48   NTclustered gi|164508134|emb|AM412176.1| 4785 g8802 i0 91.275 80.1354166666667 149 13 78 0 43 191 10 158 Phytophthora cinnamomi act2 gene for actin, strain Pr120 blastn 15386 206 0.990291262135922 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
1429749 1429749 PRJNA1010662_S_NODE_1002_length_296_cov_6.754941_g957_i0 PRJNA1010662 1002 296 6.754941 19.99462536 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 486 6.359999999999999e-133   NTclustered gi|363498776|gb|JN662487.1| 120398 g957 i0 96.284 100.168918918919 296 11 100 0 1 296 357 62 Aphanomyces stellatus strain GF 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 29650 486 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
2705160 2705160 PRJNA1010662_P_NODE_543_length_671_cov_3.136656_g492_i0 PRJNA1010662 543 671 3.136656 21.04696176 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 207 1.3499999999999999e-48   NTclustered gi|813133999|ref|XM_012342618.1| 695850 g492 i0 81.496 3.43666169895678 254 45 38 2 70 322 72 324 Saprolegnia parasitica CBS 223.65 ribonucleoprotein-associated protein mRNA blastn 2306 207 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
2705220 2705220 PRJNA1010662_S_NODE_3023_length_193_cov_2.013333_g2978_i0 PRJNA1010662 3023 193 2.013333 3.88573269 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 350 5.27e-92   NTclustered gi|1578815423|gb|MK546600.1| 1982524 g2978 i0 100 97.979274611399 189 0 98 0 1 189 840 652 Aphanomyces sp. voucher CPZ14 large subunit ribosomal RNA gene, partial sequence blastn 18910 350 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.
4829426 4829426 PRJNA1010662_P_NODE_12584_length_169_cov_0.866667_g12525_i0 PRJNA1010662 12584 169 0.866667 1.46466723 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 110 8.26e-20   NTclustered gi|813222734|ref|XM_012356268.1| 695850 g12525 i0 80.986 8.09467455621302 142 23 83 4 21 160 282 143 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 1368 110 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
6104615 6104615 PRJNA1010662_P_NODE_6285_length_219_cov_2.070588_g6226_i0 PRJNA1010662 6285 219 2.070588 4.53458772 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 113 8.76e-21   NTclustered gi|2795032696|ref|XM_067933028.1| 4785 g6226 i0 78.286 4.91324200913242 175 38 80 0 40 214 330 156 Phytophthora cinnamomi cytochrome c (IUM83_08641), partial mRNA blastn 1076 113 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
7807503 7807503 PRJNA1010662_P_NODE_8807_length_193_cov_1.423611_g8748_i0 PRJNA1010662 8807 193 1.423611 2.74756923 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 154 4.43e-33   NTclustered gi|669143973|ref|XM_008609327.1| 1156394 g8748 i0 83.636 1.38341968911917 165 25 85 2 30 193 380 217 Saprolegnia diclina VS20 50S ribosomal protein L21e mRNA blastn 267 154 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
9082324 9082324 PRJNA1010662_P_NODE_10968_length_178_cov_1.201550_g10909_i0 PRJNA1010662 10968 178 1.20155 2.138759 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 108 3.17e-19   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g10909 i0 79.605 12.4887640449438 152 29 85 2 1 151 277 127 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 2223 108 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
9082434 9082434 PRJNA1010662_P_NODE_7128_length_210_cov_0.950311_g7069_i0 PRJNA1010662 7128 210 0.950311 1.9956531 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 65.8 2.37e-6   NTclustered gi|675173790|ref|XM_008897532.1| 761204 g7069 i0 95.122 0.195238095238095 41 2 20 0 29 69 368 328 Phytophthora parasitica INRA-310 CMGC/RCK protein kinase mRNA blastn 41 65.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
9082481 9082481 PRJNA1010662_S_NODE_2548_length_206_cov_7.361963_g2503_i0 PRJNA1010662 2548 206 7.361963 15.16564378 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 342 9.539999999999999e-90   NTclustered gi|256009645|gb|GQ374534.1| 112090 g2503 i0 96.602 96.868932038835 206 7 100 0 1 206 188 393 Aphanomyces astaci strain Gb04 28S ribosomal RNA gene, partial sequence blastn 19955 342 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
10358004 10358004 PRJNA1010662_P_NODE_2109_length_349_cov_6.386667_g2050_i0 PRJNA1010662 2109 349 6.386667 22.28946783 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 222 2.37e-53   NTclustered gi|698791735|ref|XM_009830598.1| 112090 g2050 i0 79.228 26.1117478510029 337 57 94 11 19 347 554 223 Aphanomyces astaci malate dehydrogenase, NAD-dependent mRNA blastn 9113 222 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
10358093 10358093 PRJNA1010662_S_NODE_1869_length_232_cov_2.465608_g1824_i0 PRJNA1010662 1869 232 2.465608 5.72021056 Aphanomyces brasiliensis 2525538 SAR_Eukaryotes SAR_Eukaryotes 429 8.2e-116   NTclustered gi|2098511708|gb|OK235679.1| 2525538 g1824 i0 100 101.129310344828 232 0 100 0 1 232 91 322 Aphanomyces brasiliensis voucher CCIBt4545 small subunit ribosomal RNA gene, partial sequence blastn 23462 429 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces brasiliensis
11633534 11633534 PRJNA1010662_P_NODE_6470_length_217_cov_1.244048_g6411_i0 PRJNA1010662 6470 217 1.244048 2.69958416 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 104 5.22e-18   NTclustered gi|669161361|ref|XM_008618021.1| 1156394 g6411 i0 90 25.4562211981567 80 8 37 0 87 166 1392 1313 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 5524 104 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
11633589 11633589 PRJNA1010662_S_NODE_4130_length_169_cov_3.968254_g4085_i0 PRJNA1010662 4130 169 3.968254 6.70634926 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 187 3.71e-43   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g4085 i0 86.982 37.9585798816568 169 19 99 3 3 169 1575 1742 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 6415 187 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
19280524 19280524 PRJNA1010662_S_NODE_4156_length_169_cov_1.714286_g4111_i0 PRJNA1010662 4156 169 1.714286 2.89714334 Aphanomyces brasiliensis 2525538 SAR_Eukaryotes SAR_Eukaryotes 309 7.58e-80   NTclustered gi|2098511708|gb|OK235679.1| 2525538 g4111 i0 100 99.2781065088757 167 0 99 0 3 169 572 738 Aphanomyces brasiliensis voucher CCIBt4545 small subunit ribosomal RNA gene, partial sequence blastn 16778 309 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces brasiliensis
25227660 25227660 PRJNA1010662_P_NODE_10500_length_181_cov_1.181818_g10441_i0 PRJNA1010662 10500 181 1.181818 2.13909058 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 172 1.13e-38   NTclustered gi|2795054923|ref|XM_067941504.1| 4785 g10441 i0 84.571 18.9502762430939 175 25 96 2 4 177 405 232 Phytophthora cinnamomi S-adenosylmethionine synthase 2 (IUM83_16610), partial mRNA blastn 3430 172 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
25227730 25227730 PRJNA1010662_S_NODE_4440_length_164_cov_3.355372_g4395_i0 PRJNA1010662 4440 164 3.355372 5.50281008 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 303 3.42e-78   NTclustered gi|166048041|emb|CU364162.1| 100861 g4395 i0 100 96.7682926829268 164 0 100 0 1 164 536 373 Aphanomyces euteiches cDNA blastn 15870 303 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;