RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1010662" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1010662 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6533034 6533034 PRJNA1010662_P_NODE_12246_length_170_cov_1.289256_g12187_i0 PRJNA1010662 12246 170 1.289256 2.1917352 Sorangium cellulosum 56 Bacteria Bacteria 52.8 0.014   NTclustered gi|1338588479|gb|CP012673.1| 56 g12187 i0 100 0.164705882352941 28 0 16 0 61 88 12241479 12241506 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
21831690 21831690 PRJNA1010662_P_NODE_418_length_760_cov_4.368495_g372_i0 PRJNA1010662 418 760 4.368495 33.200562 Nannocystis punicea 2995304 Bacteria Bacteria 363 3.1e-95   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g372 i0 82.599 56.2092105263158 431 55 56 14 298 723 5377150 5377565 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 42719 363 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
21831711 21831711 PRJNA1010662_P_NODE_6418_length_218_cov_1.041420_g6359_i0 PRJNA1010662 6418 218 1.04142 2.2702956 Sorangium cellulosum 56 Bacteria Bacteria 52.8 0.019   NTclustered gi|1566495190|gb|CP012670.1| 56 g6359 i0 100 0.128440366972477 28 0 13 0 49 76 3713783 3713810 Sorangium cellulosum strain So ceGT47 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;