RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1010662" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1010662 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1429634 1429634 PRJNA1010662_P_NODE_11362_length_175_cov_1.642857_g11303_i0 PRJNA1010662 11362 175 1.642857 2.87499975 Patiria miniata 46514 Echinodermata other_Eukaryota 122 1.1099999999999999e-23   NTclustered gi|1944860480|ref|XM_038196284.1| 46514 g11303 i0 84.127 2.45142857142857 126 20 72 0 46 171 169 294 PREDICTED: Patiria miniata 60S ribosomal protein L11 (LOC119724952), mRNA blastn 429 122 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
18006612 18006612 PRJNA1010662_P_NODE_14315_length_166_cov_0.880342_g14256_i0 PRJNA1010662 14315 166 0.880342 1.46136772 Patiria miniata 46514 Echinodermata other_Eukaryota 63.9 6.42e-6   NTclustered gi|1944930647|ref|XM_038220906.1| 46514 g14256 i0 93.182 15.5481927710843 44 1 25 2 125 166 1914 1871 PREDICTED: Patiria miniata ATP-dependent RNA helicase DEAH12, chloroplastic-like (LOC119744775), mRNA blastn 2581 63.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
21403535 21403535 PRJNA1010662_P_NODE_9657_length_187_cov_1.246377_g9598_i0 PRJNA1010662 9657 187 1.246377 2.33072499 Metazoa 33208 Echinodermata other_Eukaryota 54.7 0.004   NTclustered gi|2707436215|ref|XR_010294361.1| 7653 g9598 i0 100 8.03208556149733 29 0 16 0 1 29 362 334 PREDICTED: Lytechinus pictus uncharacterized LOC135155023 (LOC135155023), ncRNA blastn 1502 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;