RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1010662" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1010662 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1429702 1429702 PRJNA1010662_P_NODE_4702_length_245_cov_9.285714_g4643_i0 PRJNA1010662 4702 245 9.285714 22.7499993 Cochliopodium minus 313997 Discosea other_Eukaryota 333 7.049999999999999e-87   NTclustered gi|330902862|gb|JF298257.1| 313997 g4643 i0 94.495 10.065306122449 218 8 89 4 3 219 218 4 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 2466 333 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
9082370 9082370 PRJNA1010662_P_NODE_17068_length_159_cov_6.136364_g17009_i0 PRJNA1010662 17068 159 6.136364 9.75681876 Cochliopodium minus 313997 Discosea other_Eukaryota 294 1.98e-75   NTclustered gi|330902862|gb|JF298257.1| 313997 g17009 i0 100 17.0377358490566 159 0 100 0 1 159 259 417 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 2709 294 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
23107144 23107144 PRJNA1010662_P_NODE_10879_length_178_cov_1.976744_g10820_i0 PRJNA1010662 10879 178 1.976744 3.51860432 Cochliopodium minus 313997 Discosea other_Eukaryota 239 1.08e-58   NTclustered gi|1914009695|gb|MT975597.1| 313997 g10820 i0 90.96 99.2303370786517 177 16 99 0 2 178 511 687 Cochliopodium minus clone 2 actin gene, partial cds blastn 17663 239 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;