RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1010662" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1010662 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5257907 5257907 PRJNA1010662_S_NODE_965_length_300_cov_8.964981_g920_i0 PRJNA1010662 965 300 8.964981 26.894943 Eucheilota maculata 661990 Cnidaria other_Eukaryota 169 2.66e-37   NTclustered gi|256674540|gb|FJ550444.1| 661990 g920 i0 92.373 54.4966666666667 118 9 55 0 2 119 2290 2173 Eucheilota maculata 28S ribosomal RNA gene, partial sequence blastn 16349 169 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Campanulariidae Eucheilota Eucheilota maculata
9082428 9082428 PRJNA1010662_P_NODE_6728_length_214_cov_1.527273_g6669_i0 PRJNA1010662 6728 214 1.527273 3.26836422 Anemonia sulcata 6108 Cnidaria other_Eukaryota 54.7 0.005   NTclustered gi|2917940720|emb|OZ237562.1| 6108 g6669 i0 100 0.135514018691589 29 0 14 0 168 196 547267 547239 Anemonia sulcata genome assembly, chromosome: 8 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
10358082 10358082 PRJNA1010662_P_NODE_9969_length_185_cov_1.095588_g9910_i0 PRJNA1010662 9969 185 1.095588 2.0268378 Nematostella vectensis 45351 Cnidaria other_Eukaryota 52.8 0.016   NTclustered gi|2257803309|ref|XM_032365477.2| 45351 g9910 i0 94.118 0.551351351351351 34 2 18 0 88 121 2313 2280 PREDICTED: Nematostella vectensis E3 ubiquitin-protein ligase PDZRN3-B (LOC5520393), transcript variant X2, mRNA blastn 102 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Edwardsiidae Nematostella Nematostella vectensis
19280537 19280537 PRJNA1010662_S_NODE_5416_length_151_cov_1.370370_g5371_i0 PRJNA1010662 5416 151 1.37037 2.0692587 Hydra oligactis 6088 Cnidaria other_Eukaryota 278 1.87e-70   NTclustered gi|1032656003|gb|JN594041.2| 6088 g5371 i0 100 9.80794701986755 150 0 99 0 1 150 333 482 Hydra oligactis 28S ribosomal RNA gene, partial sequence blastn 1481 278 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra oligactis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;