RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1010662" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1010662 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1429754 1429754 PRJNA1010662_S_NODE_2162_length_220_cov_15.790960_g2117_i0 PRJNA1010662 2162 220 15.79096 34.740112 Spizellomyces punctatus 109760 Fungi Fungi 156 1.44e-33   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g2117 i0 86.957 51.8136363636364 138 18 63 0 18 155 3891 4028 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 11399 156 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
11633568 11633568 PRJNA1010662_S_NODE_1050_length_290_cov_2.522267_g1005_i0 PRJNA1010662 1050 290 2.522267 7.3145743 Gromochytrium mamkaevae 1486924 Fungi Fungi 154 7.160000000000001e-33   NTclustered gi|612507318|gb|KF586842.1| 1486924 g1005 i0 82.418 58.648275862069 182 26 62 6 111 290 5975 5798 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17008 154 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
12908526 12908526 PRJNA1010662_P_NODE_1171_length_470_cov_2.847981_g1112_i0 PRJNA1010662 1171 470 2.847981 13.3855107 Synchytrium sp. 1971732 Fungi Fungi 104 1.24e-17   NTclustered gi|1168020523|gb|KY800404.1| 1971732 g1112 i0 78.528 0.346808510638298 163 31 34 4 83 243 1066 906 Synchytrium sp. voucher BPI 893319 large subunit ribosomal RNA gene, partial sequence blastn 163 104 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium sp.
16731822 16731822 PRJNA1010662_P_NODE_4934_length_240_cov_2.570681_g4875_i0 PRJNA1010662 4934 240 2.570681 6.1696344 Synchytrium microbalum 1806994 Fungi Fungi 171 5.71e-38   NTclustered gi|1759167179|ref|XM_031171911.1| 1806994 g4875 i0 84.483 1.7625 174 25 72 2 24 196 1342 1514 Synchytrium microbalum uncharacterized protein (SmJEL517_g05985), partial mRNA blastn 423 171 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
23953783 23953783 PRJNA1010662_P_NODE_4759_length_244_cov_2.338462_g4700_i0 PRJNA1010662 4759 244 2.338462 5.70584728 Batrachochytrium 100474 Fungi Fungi 150 7.589999999999999e-32   NTclustered gi|413965569|gb|AC254096.1| 109871 g4700 i0 85.816 12.766393442623 141 20 58 0 3 143 3352 3212 Batrachochytrium dendrobatidis clone JGIBIIY-21E11, complete sequence blastn 3115 150 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;