RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1010662" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1010662 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3981426 3981426 PRJNA1010662_S_NODE_3644_length_179_cov_1.257353_g3599_i0 PRJNA1010662 3644 179 1.257353 2.25066187 uncultured Cercozoa 175275 SAR_Eukaryotes SAR_Eukaryotes 326 8.09e-85   NTclustered gi|1002343666|gb|KU738544.1| 175275 g3599 i0 99.441 7.97206703910615 179 1 100 0 1 179 94 272 Uncultured Cercozoa clone freshwater_lake_filtered_plankton7 18S ribosomal RNA gene, partial sequence blastn 1427 326 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
3981430 3981430 PRJNA1010662_S_NODE_4044_length_171_cov_1.539062_g3999_i0 PRJNA1010662 4044 171 1.539062 2.63179602 Helkesimastix marina 645121 SAR_Eukaryotes SAR_Eukaryotes 233 4.77e-57   NTclustered gi|237687967|gb|FJ410915.1| 645121 g3999 i0 91.329 3.58479532163743 173 11 100 3 1 171 920 750 Helkesimastix sp. ATCC 50328 18S ribosomal RNA gene, partial sequence blastn 613 233 1 Eukaryota Sar   Cercozoa     Helkesimastigidae Helkesimastix Helkesimastix marina
7807523 7807523 PRJNA1010662_S_NODE_2687_length_202_cov_1.842767_g2642_i0 PRJNA1010662 2687 202 1.842767 3.72238934 Helkesimastix marina 645121 SAR_Eukaryotes SAR_Eukaryotes 340 3.35e-89   NTclustered gi|237687967|gb|FJ410915.1| 645121 g2642 i0 100 75.1039603960396 184 0 91 0 5 188 399 216 Helkesimastix sp. ATCC 50328 18S ribosomal RNA gene, partial sequence blastn 15171 340 1 Eukaryota Sar   Cercozoa     Helkesimastigidae Helkesimastix Helkesimastix marina
9082487 9082487 PRJNA1010662_S_NODE_3028_length_193_cov_1.740000_g2983_i0 PRJNA1010662 3028 193 1.74 3.3582 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 351 1.46e-92   NTclustered gi|238617602|gb|FJ973377.1| 188950 g2983 i0 99.485 1.00518134715026 194 0 100 1 1 193 571 764 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 194 351 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
18006744 18006744 PRJNA1010662_S_NODE_3235_length_188_cov_2.400000_g3190_i0 PRJNA1010662 3235 188 2.4 4.512 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 342 8.539999999999999e-90   NTclustered gi|238617602|gb|FJ973377.1| 188950 g3190 i0 99.468 70.5691489361702 188 1 100 0 1 188 1953 1766 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 13267 342 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;