RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1010662" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1010662 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3981338 3981338 PRJNA1010662_P_NODE_3844_length_267_cov_1.674312_g3785_i0 PRJNA1010662 3844 267 1.674312 4.47041304 Helicobacter pylori 210 Bacteria Bacteria 58.4 5.25e-4   NTclustered gi|2641848563|gb|CP078334.1| 210 g3785 i0 100 1.31460674157303 31 0 12 0 80 110 285575 285605 Helicobacter pylori strain HpGP-SPA-308 chromosome, complete genome blastn 351 58.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
6533114 6533114 PRJNA1010662_P_NODE_6946_length_211_cov_3.765432_g6887_i0 PRJNA1010662 6946 211 3.765432 7.94506152 Helicobacter pylori 210 Bacteria Bacteria 67.6 6.62e-7   NTclustered gi|2642281662|gb|CP078399.1| 210 g6887 i0 91.837 5.44075829383886 49 2 23 2 45 92 7812 7765 Helicobacter pylori strain HpGP-POR-115 chromosome, complete genome blastn 1148 67.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
13754885 13754885 PRJNA1010662_S_NODE_3731_length_177_cov_1.126866_g3686_i0 PRJNA1010662 3731 177 1.126866 1.99455282 Campylobacter 194 Bacteria Bacteria 327 2.2199999999999996e-85   NTclustered gi|285194055|gb|GU425725.1| 203 g3686 i0 100 106 177 0 100 0 1 177 725 549 Campylobacter rectus clone WWP_SS3_P12 16S ribosomal RNA gene, partial sequence blastn 18762 327 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;