RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1010662" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1010662 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3981386 3981386 PRJNA1010662_P_NODE_8124_length_199_cov_2.413333_g8065_i0 PRJNA1010662 8124 199 2.413333 4.80253267 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 111 2.81e-20   NTclustered gi|219123891|ref|XM_002182214.1| 556484 g8065 i0 85.714 1.05527638190955 105 15 53 0 50 154 321 425 Phaeodactylum tricornutum CCAP 1055/1 ubiquitin extension protein 1/2 (UBI1/2), mRNA blastn 210 111 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
11633476 11633476 PRJNA1010662_P_NODE_16850_length_162_cov_0.911504_g16791_i0 PRJNA1010662 16850 162 0.911504 1.47663648 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.001   NTclustered gi|224013023|ref|XM_002295128.1| 296543 g16791 i0 100 0.901234567901235 30 0 19 0 21 50 1711 1740 Thalassiosira pseudonana CCMP1335 predicted protein partial mRNA blastn 146 56.5 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
18006678 18006678 PRJNA1010662_P_NODE_5335_length_234_cov_1.118919_g5276_i0 PRJNA1010662 5335 234 1.118919 2.61827046 Sundstroemia setigera 3005 SAR_Eukaryotes SAR_Eukaryotes 191 4.26e-44   NTclustered gi|2172620428|ref|NC_059919.1| 3005 g5276 i0 85.792 81.6880341880342 183 23 77 3 43 223 24963 24782 Rhizosolenia setigera isolate CNS00456 mitochondrion, complete genome blastn 19115 191 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Sundstroemia Sundstroemia setigera
20556015 20556015 PRJNA1010662_P_NODE_1237_length_459_cov_1.617073_g1178_i0 PRJNA1010662 1237 459 1.617073 7.42236507 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 318 3.9799999999999996e-82   NTclustered gi|657012367|gb|KF302531.1| 2850 g1178 i0 83.976 32.9259259259259 337 48 73 6 118 451 16 349 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 15113 318 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;