RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1010662" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1010662 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2705104 2705104 PRJNA1010662_P_NODE_16243_length_163_cov_0.894737_g16184_i0 PRJNA1010662 16243 163 0.894737 1.45842131 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 56.5 0.001   NTclustered gi|2131941663|dbj|AP025252.1| 2802972 g16184 i0 100 0.184049079754601 30 0 18 0 40 69 5605994 5606023 Bryobacterales bacterium F-183 DNA, nearly complete genome blastn 30 56.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
4829488 4829488 PRJNA1010662_S_NODE_4024_length_171_cov_2.929688_g3979_i0 PRJNA1010662 4024 171 2.929688 5.00976648 Bacteria 2 Bacteria Bacteria 292 7.75e-75   NTclustered gi|2874254027|emb|OY970352.1| 171953 g3979 i0 97.647 135.292397660819 170 4 99 0 1 170 2367530 2367361 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 23135 292 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
6533178 6533178 PRJNA1010662_S_NODE_4646_length_161_cov_4.389831_g4601_i0 PRJNA1010662 4646 161 4.389831 7.06762791 Chloracidobacterium validum 2821543 Bacteria Bacteria 241 2.66e-59   NTclustered gi|2033659757|gb|CP072648.1| 2821543 g4601 i0 93.789 31.6211180124224 161 8 100 1 1 161 106000 105842 Chloracidobacterium validum strain BV2-C chromosome 1, complete sequence blastn 5091 241 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Chloracidobacterium Chloracidobacterium validum
7807531 7807531 PRJNA1010662_S_NODE_3687_length_178_cov_1.422222_g3642_i0 PRJNA1010662 3687 178 1.422222 2.53155516 Thermoanaerobaculum sp. 2510637 Bacteria Bacteria 52.8 0.015   NTclustered gi|2314712957|dbj|AP024672.1| 2510637 g3642 i0 100 0.157303370786517 28 0 16 0 69 96 2710639 2710612 MAG: Thermoanaerobaculum sp. KatS3mg007 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia Thermoanaerobaculales Thermoanaerobaculaceae Thermoanaerobaculum Thermoanaerobaculum sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;