RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1010662" and tax_kingdom = "Orthornavirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA1010662 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1001472 1001472 PRJNA1010662_S_NODE_2841_length_198_cov_1.858065_g2796_i0 PRJNA1010662 2841 198 1.858065 3.6789687 Pestivirus 11095 Viruses Viruses 300 5.55e-77   NTclustered gi|800924334|gb|KP941592.1| 11099 g2796 i0 93.939 99.2323232323232 198 12 100 0 1 198 8789 8986 Bovine viral diarrhea virus 1 strain USMARC-55926 polyprotein gene, complete cds blastn 19648 300 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
2705231 2705231 PRJNA1010662_S_NODE_3823_length_175_cov_1.954545_g3778_i0 PRJNA1010662 3823 175 1.954545 3.42045375 Sopidub virus 3131684 Viruses Viruses 141 3.06e-29   NTclustered gi|2717323145|gb|PP173985.1| 3131684 g3778 i0 88.136 8.46857142857143 118 14 67 0 48 165 2145 2262 MAG: Sopidub virus isolate SP1B_k141_213983 genomic sequence blastn 1482 141 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Picobirnaviridae   Sopidub virus
5257865 5257865 PRJNA1010662_P_NODE_9565_length_187_cov_2.623188_g9506_i0 PRJNA1010662 9565 187 2.623188 4.90536156 Sopidub virus 3131684 Viruses Viruses 117 5.600000000000001e-22   NTclustered gi|2717323145|gb|PP173985.1| 3131684 g9506 i0 88.542 54.8877005347594 96 11 51 0 1 96 2225 2130 MAG: Sopidub virus isolate SP1B_k141_213983 genomic sequence blastn 10264 117 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Picobirnaviridae   Sopidub virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;