RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1010662" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA1010662 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5257859 5257859 PRJNA1010662_P_NODE_8865_length_192_cov_2.419580_g8806_i0 PRJNA1010662 8865 192 2.41958 4.6455936 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 62.1 2.75e-5   NTclustered gi|154415084|ref|XM_001580518.1| 412133 g8806 i0 94.872 0.59375 39 2 20 0 52 90 314 352 Trichomonas vaginalis G3 cysteine-type peptidase protein (TVAGG3_0483980), partial mRNA blastn 114 62.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
22678319 22678319 PRJNA1010662_S_NODE_5018_length_156_cov_1.734513_g4973_i0 PRJNA1010662 5018 156 1.734513 2.70584028 Hoplonympha 285698 Parabasalia other_Eukaryota 54.7 0.004   NTclustered gi|63147268|dbj|AB183879.1| 285699 g4973 i0 96.875 1.66666666666667 32 1 21 0 30 61 12 43 Hoplonympha sp. MO-2004-1 gene for small subunit rRNA, partial sequence blastn 260 54.7 1 Eukaryota Metamonada   Parabasalia   Trichonymphida Hoplonymphidae Hoplonympha Hoplonympha sp. MO-2004-1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;