RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1009807" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1009807 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1429597 1429597 PRJNA1009807_S_NODE_3762_length_169_cov_2.146154_g3734_i0 PRJNA1009807 3762 169 2.146154 3.62700026 Chloracidobacterium validum 2821543 Bacteria Bacteria 154 3.76e-33   NTclustered gi|2033659757|gb|CP072648.1| 2821543 g3734 i0 92.523 479.218934911243 107 8 63 0 63 169 105588 105694 Chloracidobacterium validum strain BV2-C chromosome 1, complete sequence blastn 80988 154 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Chloracidobacterium Chloracidobacterium validum
5257717 5257717 PRJNA1009807_S_NODE_2765_length_191_cov_2.796053_g2737_i0 PRJNA1009807 2765 191 2.796053 5.34046123 Acidobacteriota bacterium 1978231 Bacteria Bacteria 270 4.17e-68   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g2737 i0 92.188 467.17277486911 192 13 100 2 1 191 4648751 4648561 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 89230 270 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
10357939 10357939 PRJNA1009807_S_NODE_529_length_399_cov_3.883333_g501_i0 PRJNA1009807 529 399 3.883333 15.49449867 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 531 4.03e-146   NTclustered gi|2874253692|emb|OY969418.1| 171953 g501 i0 90.709 252.709273182957 409 22 100 8 1 399 4232089 4232491 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 100831 531 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
13754790 13754790 PRJNA1009807_S_NODE_2611_length_196_cov_2.044586_g2583_i0 PRJNA1009807 2611 196 2.044586 4.00738856 Bacteria 2 Bacteria Bacteria 261 2.5900000000000002e-65   NTclustered gi|2874253692|emb|OY969418.1| 171953 g2583 i0 90.816 112.255102040816 196 16 99 2 2 196 4232785 4232979 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 22002 261 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;