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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA1009807" and tax_kingdom = "Viridiplantae"

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tax_phylum 2

tax_clade 2

tax_superkingdom 1

tax_kingdom 1

  • Viridiplantae · 11 ✖

bioproject 1

  • PRJNA1009807 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
154851 154851 PRJNA1009807_S_NODE_881_length_319_cov_4.207143_g853_i0 PRJNA1009807 881 319 4.207143 13.42078617 Mantoniella squamata 13608 Plants Plants 228 4.6299999999999985e-55   NTclustered gi|290770784|emb|FN563096.1| 13608 g853 i0 80.124 76.3761755485893 322 50 98 14 5 317 2829 2513 Mantoniella squamata plastid 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), strain CCAP 1965/1 blastn 24364 228 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella squamata
1001396 1001396 PRJNA1009807_S_NODE_281_length_497_cov_20.032751_g254_i0 PRJNA1009807 281 497 20.032751 99.56277247 Selaginella 3246 Plants Plants 137 1.3e-27   NTclustered gi|2484062546|gb|OQ799636.1| 189553 g254 i0 76.753 25.6378269617706 271 48 53 12 3 266 4408 4146 Selaginella dregei voucher B Liu 62298 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12742 137 1 Eukaryota Embryophyta Viridiplantae Streptophyta Lycopodiopsida Selaginellales Selaginellaceae Selaginella Selaginella dregei
1429580 1429580 PRJNA1009807_S_NODE_2222_length_210_cov_2.093567_g2194_i0 PRJNA1009807 2222 210 2.093567 4.3964907 Chloroparvula pacifica 1883388 Plants Plants 84.2 6.53e-12   NTclustered gi|1693285448|ref|NC_042603.1| 1883388 g2194 i0 96.078 10.1285714285714 51 2 24 0 146 196 41357 41407 Chloroparvula pacifica culture RCC:4656 mitochondrion, complete genome blastn 2127 84.2 1 Eukaryota   Viridiplantae Chlorophyta Chloropicophyceae Chloropicales Chloropicaceae Chloroparvula Chloroparvula pacifica
2276523 2276523 PRJNA1009807_S_NODE_1222_length_274_cov_12.791489_g1194_i0 PRJNA1009807 1222 274 12.791489 35.04867986 Eukaryota 2759 Plants Plants 211 3.92e-50   NTclustered gi|371782091|emb|HE610123.1| 3107 g1194 i0 92.157 55.8394160583942 153 7 56 4 1 153 4979 5126 Hydrodictyon reticulatum 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain M2243 blastn 15300 211 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Hydrodictyon Hydrodictyon reticulatum
9929392 9929392 PRJNA1009807_S_NODE_2348_length_205_cov_1.861446_g2320_i0 PRJNA1009807 2348 205 1.861446 3.8159643 Klebsormidium 3174 Plants Plants 379 7.229999999999999e-101   NTclustered gi|21635219|gb|AF393598.1| 3175 g2320 i0 100 148.931707317073 205 0 100 0 1 205 5446 5650 Klebsormidium flaccidum small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; large subunit ribosomal RNA (rrl) gene, complete sequence; and 5S ribosomal RNA (rrf) gene, partial sequence; chloroplast genes for chloroplast products blastn 30531 379 1 Eukaryota   Viridiplantae Streptophyta Klebsormidiophyceae Klebsormidiales Klebsormidiaceae Klebsormidium Klebsormidium flaccidum
9929418 9929418 PRJNA1009807_S_NODE_688_length_353_cov_24.519108_g660_i0 PRJNA1009807 688 353 24.519108 86.55245124 Eukaryota 2759 Plants Plants 643 4.329999999999998e-180   NTclustered gi|1714003650|gb|MN243923.1| 3079 g660 i0 99.715 99.3031161473088 351 1 99 0 3 353 887 537 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 35054 645 0.996899224806202 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
11633411 11633411 PRJNA1009807_S_NODE_3190_length_181_cov_1.140845_g3162_i0 PRJNA1009807 3190 181 1.140845 2.06492945 Cucumis melo 3656 Plants Plants 54.7 0.004   NTclustered gi|733578316|emb|LN713263.1| 3656 g3162 i0 96.97 0.364640883977901 33 0 18 1 111 143 23720629 23720598 Cucumis melo genomic chromosome, chr_9 blastn 66 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucumis Cucumis melo
12908502 12908502 PRJNA1009807_S_NODE_4531_length_157_cov_1.330508_g4503_i0 PRJNA1009807 4531 157 1.330508 2.08889756 Sinapis alba 3728 Plants Plants 285 1.17e-72   NTclustered gi|21157|emb|X66325.1| 3728 g4503 i0 99.363 19.7707006369427 157 1 100 0 1 157 6675 6831 S.alba 18S, 5.8S & 25S rRNA genes blastn 3104 285 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Sinapis Sinapis alba
16731683 16731683 PRJNA1009807_S_NODE_1074_length_293_cov_1.897638_g1046_i0 PRJNA1009807 1074 293 1.897638 5.56007934 Camellia sinensis 4442 Plants Plants 73.1 2.09e-8   NTclustered gi|1585687555|ref|XR_003647768.1| 4442 g1046 i0 78.899 0.573378839590444 109 22 37 1 134 242 1850 1957 PREDICTED: Camellia sinensis 28S ribosomal RNA (LOC114315374), rRNA blastn 168 73.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Theaceae Camellia Camellia sinensis
18006551 18006551 PRJNA1009807_S_NODE_2615_length_196_cov_1.815287_g2587_i0 PRJNA1009807 2615 196 1.815287 3.55796252 Caulerpa sertularioides 76315 Plants Plants 76.8 1.01e-9   NTclustered gi|1799633313|gb|MK792750.1| 148953 g2587 i0 87.692 2.13265306122449 65 8 33 0 32 96 9400 9336 Caulerpa sertularioides f. longipes chloroplast, complete genome blastn 418 76.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Caulerpaceae Caulerpa Caulerpa sertularioides
22678234 22678234 PRJNA1009807_S_NODE_4158_length_162_cov_3.634146_g4130_i0 PRJNA1009807 4158 162 3.634146 5.88731652 Pedinomonas 3158 Plants Plants 134 4.6800000000000005e-27   NTclustered gi|371782136|emb|HE610168.1| 160064 g4130 i0 91.753 91.1111111111111 97 7 59 1 65 160 2528 2624 Pedinomonas tuberculata plastid 16S rRNA gene (partial), 23S rRNA gene (partial), tRNA-Ile gene, tRNA-Ala gene and ITS1, strain SAG 42.84 blastn 14760 134 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae Pedinomonadales Pedinomonadaceae Pedinomonas Pedinomonas tuberculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;