RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1009807" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA1009807 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3981221 3981221 PRJNA1009807_S_NODE_1324_length_263_cov_7.678571_g1296_i0 PRJNA1009807 1324 263 7.678571 20.19464173 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 486 5.5499999999999986e-133   NTclustered gi|77994657|gb|DQ207595.1| 127150 g1296 i0 100 89.5855513307985 263 0 100 0 1 263 439 177 Rhynchomonas nasuta strain HFCC17 18S ribosomal RNA gene, partial sequence blastn 23561 486 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
9082297 9082297 PRJNA1009807_S_NODE_3928_length_166_cov_2.039370_g3900_i0 PRJNA1009807 3928 166 2.03937 3.3853542 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 307 2.69e-79   NTclustered gi|77994657|gb|DQ207595.1| 127150 g3900 i0 100 88.3915662650602 166 0 100 0 1 166 1167 1002 Rhynchomonas nasuta strain HFCC17 18S ribosomal RNA gene, partial sequence blastn 14673 307 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
11633397 11633397 PRJNA1009807_S_NODE_1630_length_239_cov_5.310000_g1602_i0 PRJNA1009807 1630 239 5.31 12.6909 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 372 1.45e-98   NTclustered gi|68271543|gb|DQ086724.1| 127150 g1602 i0 94.606 160.451882845188 241 11 100 2 1 239 407 647 Rhynchomonas nasuta isolate RHYNCHO large subunit ribosomal RNA gene, partial sequence blastn 38348 372 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
17579268 17579268 PRJNA1009807_S_NODE_3794_length_168_cov_3.697674_g3766_i0 PRJNA1009807 3794 168 3.697674 6.21209232 Leishmania 5658 Euglenozoa other_Eukaryota 206 1.02e-48   NTclustered gi|2593250474|emb|OY748421.1| 5660 g3766 i0 96.032 90.7797619047619 126 5 75 0 1 126 991005 990880 Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 27 blastn 15251 206 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
19280335 19280335 PRJNA1009807_S_NODE_1556_length_244_cov_3.400000_g1528_i0 PRJNA1009807 1556 244 3.4 8.296 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 451 1.86e-122   NTclustered gi|77994657|gb|DQ207595.1| 127150 g1528 i0 100 99.3606557377049 244 0 100 0 1 244 1612 1855 Rhynchomonas nasuta strain HFCC17 18S ribosomal RNA gene, partial sequence blastn 24244 451 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
21403461 21403461 PRJNA1009807_S_NODE_1557_length_244_cov_3.195122_g1529_i0 PRJNA1009807 1557 244 3.195122 7.79609768 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 113 9.95e-21   NTclustered gi|440222381|gb|JX030049.1| 5659 g1529 i0 92.5 63.6762295081967 80 5 51 1 165 243 822 743 Leishmania amazonensis isolate LaPH8.rRNA.25 28S ribosomal RNA (LSU-beta), partial sequence blastn 15537 113 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis
24380838 24380838 PRJNA1009807_S_NODE_2780_length_191_cov_1.598684_g2752_i0 PRJNA1009807 2780 191 1.598684 3.05348644 uncultured marine diplonemid 547051 Euglenozoa other_Eukaryota 150 5.66e-32   NTclustered gi|223047901|gb|FJ032685.1| 547051 g2752 i0 88.71 5.04712041884817 124 12 65 2 41 164 1317 1438 Uncultured marine diplonemid clone Ma131_1A46 28S ribosomal RNA gene, partial sequence blastn 964 150 1 Eukaryota Discoba   Euglenozoa Diplonemea       uncultured marine diplonemid

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;