RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1009807" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 4 ✖

bioproject 1

  • PRJNA1009807 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
154805 154805 PRJNA1009807_S_NODE_181_length_590_cov_12.871143_g160_i0 PRJNA1009807 181 590 12.871143 75.9397437 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 398 6.5e-106   NTclustered gi|300078503|gb|GU001165.1| 238746 g160 i0 86.089 60.6423728813559 381 40 63 9 221 590 1417 1039 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 35779 398 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
1429596 1429596 PRJNA1009807_S_NODE_3682_length_170_cov_6.022901_g3654_i0 PRJNA1009807 3682 170 6.022901 10.2389317 uncultured Micronuclearia 1595896 Root_unresolved Root_unresolved 309 7.64e-80   NTclustered gi|1516250890|gb|MK177607.1| 1595896 g3654 i0 99.412 100.658823529412 170 1 100 0 1 170 1534 1365 Uncultured Micronuclearia clone DDI50.fa small subunit ribosomal RNA gene, partial sequence blastn 17112 309 1 Eukaryota CRuMs       Rigifilida   Micronuclearia uncultured Micronuclearia
9082280 9082280 PRJNA1009807_S_NODE_2388_length_203_cov_18.268293_g2360_i0 PRJNA1009807 2388 203 18.268293 37.08463479 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 119 1.72e-22   NTclustered gi|300078503|gb|GU001165.1| 238746 g2360 i0 77.941 21.9014778325123 204 36 97 7 7 203 4419 4218 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4446 119 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
15457407 15457407 PRJNA1009807_S_NODE_333_length_475_cov_16.178899_g305_i0 PRJNA1009807 333 475 16.178899 76.84977025 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 621 2.8099999999999996e-173   NTclustered gi|300078503|gb|GU001165.1| 238746 g305 i0 90.356 101.012631578947 477 40 100 6 1 475 2560 3032 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 47981 621 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;