RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA1009807" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA1009807 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1001422 1001422 PRJNA1009807_S_NODE_781_length_335_cov_36.111486_g753_i0 PRJNA1009807 781 335 36.111486 120.9734781 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 93.5 1.86e-14   NTclustered gi|300078498|gb|GU001160.1| 5755 g753 i0 93.651 18.9283582089552 63 2 19 2 274 335 7629 7568 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6341 93.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7807375 7807375 PRJNA1009807_S_NODE_4547_length_156_cov_35.051282_g4519_i0 PRJNA1009807 4547 156 35.051282 54.67999992 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 281 1.51e-71   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g4519 i0 99.355 99.6410256410256 155 1 99 0 1 155 979 1133 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 15544 281 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
9082272 9082272 PRJNA1009807_S_NODE_1868_length_226_cov_6.770053_g1840_i0 PRJNA1009807 1868 226 6.770053 15.30031978 Protacanthamoeba bohemica 325062 Discosea other_Eukaryota 412 8.01e-111   NTclustered gi|2806326584|gb|PQ345834.1| 325062 g1840 i0 99.558 64.8230088495575 226 1 100 0 1 226 472 247 Protacanthamoeba bohemica isolate 6FSb1 small subunit ribosomal RNA gene, partial sequence blastn 14650 412 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba bohemica
9082285 9082285 PRJNA1009807_S_NODE_3168_length_181_cov_38.091549_g3140_i0 PRJNA1009807 3168 181 38.091549 68.94570369 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 119 1.49e-22   NTclustered gi|221185864|gb|FJ577811.1| 590481 g3140 i0 93.75 22.1823204419889 80 4 72 1 4 83 1175 1097 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 4015 119 1 Eukaryota Amoebozoa             uncultured Amoebozoa
15457426 15457426 PRJNA1009807_S_NODE_673_length_356_cov_28.154574_g645_i0 PRJNA1009807 673 356 28.154574 100.23028344 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 645 1.2199999999999996e-180   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g645 i0 100 66.247191011236 349 0 98 0 2 350 986 638 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 23584 645 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
17579253 17579253 PRJNA1009807_S_NODE_2954_length_186_cov_9.462585_g2926_i0 PRJNA1009807 2954 186 9.462585 17.6004081 Acanthamoebidae 33677 Discosea other_Eukaryota 324 3.05e-84   NTclustered gi|2046610951|gb|MZ314579.1| 325062 g2926 i0 98.37 82.2043010752688 184 3 99 0 1 184 190 7 Protacanthamoeba bohemica isolate 157 small subunit ribosomal RNA gene, partial sequence blastn 15290 324 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba bohemica
18006580 18006580 PRJNA1009807_S_NODE_875_length_319_cov_41.560714_g847_i0 PRJNA1009807 875 319 41.560714 132.57867766 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 590 5.1299999999999986e-164   NTclustered gi|399764168|gb|JQ271679.1| 1215977 g847 i0 100 80.1222570532915 319 0 100 0 1 319 89 407 Copromyxa sp. PKD 2011 strain ZEB4 18S ribosomal RNA gene, partial sequence blastn 25559 590 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
19280371 19280371 PRJNA1009807_S_NODE_976_length_303_cov_39.590909_g948_i0 PRJNA1009807 976 303 39.590909 119.96045427 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 200 9.52e-47   NTclustered gi|221185864|gb|FJ577811.1| 590481 g948 i0 79.027 27.5973597359736 329 41 100 19 1 303 823 497 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 8362 200 1 Eukaryota Amoebozoa             uncultured Amoebozoa
23107129 23107129 PRJNA1009807_S_NODE_539_length_396_cov_28.689076_g511_i0 PRJNA1009807 539 396 28.689076 113.60874096 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 717 0   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g511 i0 100 32.1388888888889 388 0 98 0 9 396 1709 1322 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 12727 717 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
23953744 23953744 PRJNA1009807_S_NODE_359_length_462_cov_14.860520_g331_i0 PRJNA1009807 359 462 14.86052 68.6556024 Vexillifera 218659 Root_unresolved Root_unresolved 451 3.79e-122   NTclustered gi|221185864|gb|FJ577811.1| 590481 g331 i0 84.375 35.0865800865801 480 54 99 16 1 461 1325 1802 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 16210 451 1 Eukaryota Amoebozoa             uncultured Amoebozoa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;