RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1008624" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1008624 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7806753 7806753 PRJNA1008624_P_NODE_21767_length_186_cov_1.138686_g21579_i0 PRJNA1008624 21767 186 1.138686 2.11795596 Myxococcota bacterium 2818507 Bacteria Bacteria 206 1.15e-48   NTclustered gi|2907625649|emb|OZ223209.1| 2818507 g21579 i0 89.571 456.376344086022 163 16 87 1 21 182 5219126 5218964 MAG: Myxococcota bacterium isolate 6e5ad1d4-156e-4916-952c-8a0b14857fe9 genome assembly, chromosome: 1 blastn 84886 206 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
16730961 16730961 PRJNA1008624_P_NODE_17394_length_204_cov_1.632258_g17206_i0 PRJNA1008624 17394 204 1.632258 3.32980632 Labilithrix luteola 1391654 Bacteria Bacteria 355 1.21e-93   NTclustered gi|913610804|gb|CP012333.1| 1391654 g17206 i0 98.039 179.583333333333 204 4 100 0 1 204 3944282 3944079 Labilithrix luteola strain DSM 27648, complete genome blastn 36635 355 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
18006333 18006333 PRJNA1008624_P_NODE_4635_length_394_cov_2.973913_g4448_i0 PRJNA1008624 4635 394 2.973913 11.71721722 Labilithrix luteola 1391654 Bacteria Bacteria 641 1.7599999999999998e-179   NTclustered gi|913610804|gb|CP012333.1| 1391654 g4448 i0 96.867 157.187817258883 383 12 97 0 1 383 3942854 3942472 Labilithrix luteola strain DSM 27648, complete genome blastn 61932 641 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;