RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1008624" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1008624 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6532070 6532070 PRJNA1008624_P_NODE_12566_length_236_cov_1.620321_g12378_i0 PRJNA1008624 12566 236 1.620321 3.82395756 Trithigmostoma cucullulus 1346499 SAR_Eukaryotes SAR_Eukaryotes 274 4.15e-69   NTclustered gi|759083539|gb|KM222156.1| 1346499 g12378 i0 89.593 74.1652542372881 221 15 92 6 12 228 112 328 Trithigmostoma cucullulus voucher CXM08110902 large subunit ribosomal RNA gene, partial sequence blastn 17503 274 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Trithigmostoma Trithigmostoma cucullulus
10357223 10357223 PRJNA1008624_P_NODE_18289_length_199_cov_2.253333_g18101_i0 PRJNA1008624 18289 199 2.253333 4.48413267 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 357 3.2699999999999996e-94   NTclustered gi|512134943|gb|JX178902.1| 1295638 g18101 i0 99.49 98.5879396984925 196 1 98 0 1 196 1376 1181 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19619 357 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;