RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1008624" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 7 ✖

bioproject 1

  • PRJNA1008624 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1001295 1001295 PRJNA1008624_P_NODE_11521_length_246_cov_1.822335_g11333_i0 PRJNA1008624 11521 246 1.822335 4.4829441 Deinococcus 1298 Bacteria Bacteria 420 5.29e-113   NTclustered gi|1142915234|gb|KX832182.1| 47478 g11333 i0 97.551 99.9593495934959 245 6 99 0 1 245 154 398 Deinococcus sp. strain 311:FR1_AP2_32 16S ribosomal RNA gene, partial sequence blastn 24590 420 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
4829372 4829372 PRJNA1008624_P_NODE_7364_length_309_cov_1.923077_g7176_i0 PRJNA1008624 7364 309 1.923077 5.94230793 Deinococcus 1298 Bacteria Bacteria 460 4.05e-125   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g7176 i0 93.831 353.980582524272 308 15 99 4 4 309 1454356 1454051 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 109380 460 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
6104483 6104483 PRJNA1008624_P_NODE_19185_length_195_cov_1.376712_g18997_i0 PRJNA1008624 19185 195 1.376712 2.6845884 Deinococcus 1298 Bacteria Bacteria 220 4.36e-53   NTclustered gi|1220362168|gb|CP021081.1| 317577 g18997 i0 87.565 641.917948717949 193 21 98 3 4 194 2343021 2342830 Deinococcus ficus strain CC-FR2-10, complete genome blastn 125174 220 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
6104505 6104505 PRJNA1008624_P_NODE_30545_length_166_cov_1.649573_g30357_i0 PRJNA1008624 30545 166 1.649573 2.73829118 Deinococcus 1298 Bacteria Bacteria 302 1.2500000000000001e-77   NTclustered gi|1142915234|gb|KX832182.1| 47478 g30357 i0 100 104.048192771084 163 0 98 0 1 163 865 703 Deinococcus sp. strain 311:FR1_AP2_32 16S ribosomal RNA gene, partial sequence blastn 17272 302 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
6104527 6104527 PRJNA1008624_P_NODE_5745_length_351_cov_2.632450_g5557_i0 PRJNA1008624 5745 351 2.63245 9.2398995 Deinococcus 1298 Bacteria Bacteria 501 2.74e-137   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g5557 i0 92.795 389.296296296296 347 24 99 1 2 348 72950 72605 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 136643 505 0.992079207920792 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
7378944 7378944 PRJNA1008624_P_NODE_9386_length_273_cov_2.040179_g9198_i0 PRJNA1008624 9386 273 2.040179 5.56968867 Deinococcus 1298 Bacteria Bacteria 401 2.1599999999999994e-107   NTclustered gi|470486828|ref|NR_076782.1| 502394 g9198 i0 94.007 202.6336996337 267 12 98 3 4 270 1744 1482 Deinococcus gobiensis strain I-0 23S ribosomal RNA gene, complete sequence blastn 55319 401 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis
20555290 20555290 PRJNA1008624_P_NODE_18557_length_198_cov_1.577181_g18369_i0 PRJNA1008624 18557 198 1.577181 3.12281838 Deinococcus actinosclerus 1768108 Bacteria Bacteria 346 7.03e-91   NTclustered gi|972944657|gb|CP013910.1| 1768108 g18369 i0 98.469 192.969696969697 196 3 99 0 1 196 74117 73922 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 38208 346 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;