RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1008624" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA1008624 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1429206 1429206 PRJNA1008624_P_NODE_31282_length_166_cov_0.888889_g31094_i0 PRJNA1008624 31282 166 0.888889 1.47555574 Ripella sp. 805 1217113 Discosea other_Eukaryota 270 3.5299999999999998e-68   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g31094 i0 96.386 80 166 3 99 3 2 165 830 666 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 13280 270 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
3980538 3980538 PRJNA1008624_P_NODE_18784_length_197_cov_1.385135_g18596_i0 PRJNA1008624 18784 197 1.385135 2.72871595 Acytostelium leptosomum 133408 Evosea other_Eukaryota 359 8.98e-95   NTclustered gi|1057487862|gb|KX539491.1| 133408 g18596 i0 100 2.81725888324873 194 0 98 0 1 194 3301 3494 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 555 359 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
10357079 10357079 PRJNA1008624_P_NODE_13769_length_226_cov_2.141243_g13581_i0 PRJNA1008624 13769 226 2.141243 4.83920918 Acytostelium leptosomum 133408 Evosea other_Eukaryota 390 3.749999999999999e-104   NTclustered gi|1057487862|gb|KX539491.1| 133408 g13581 i0 98.206 88.0176991150443 223 4 99 0 1 223 1640 1418 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 19892 390 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
23106434 23106434 PRJNA1008624_P_NODE_20579_length_190_cov_1.099291_g20391_i0 PRJNA1008624 20579 190 1.099291 2.0886529 Acytostelium leptosomum 133408 Evosea other_Eukaryota 329 6.730000000000001e-86   NTclustered gi|1057487862|gb|KX539491.1| 133408 g20391 i0 97.895 9.99473684210526 190 4 100 0 1 190 2595 2406 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 1899 329 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
23107017 23107017 PRJNA1008624_P_NODE_8259_length_291_cov_1.433884_g8071_i0 PRJNA1008624 8259 291 1.433884 4.17260244 Acytostelium leptosomum 133408 Evosea other_Eukaryota 505 1.7199999999999995e-138   NTclustered gi|1057487862|gb|KX539491.1| 133408 g8071 i0 97.938 87.2920962199313 291 6 100 0 1 291 851 1141 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 25402 505 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;