RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1008049" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA1008049 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7378851 7378851 PRJNA1008049_S_NODE_166_length_335_cov_7.480392_g148_i0 PRJNA1008049 166 335 7.480392 25.0593132 Deinococcus 1298 Bacteria Bacteria 608 1.489999999999999e-169   NTclustered gi|470478007|ref|NR_076423.1| 68909 g148 i0 99.403 214.576119402985 335 2 100 0 1 335 843 509 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 71883 614 0.990228013029316 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
15029056 15029056 PRJNA1008049_S_NODE_412_length_258_cov_7.021834_g394_i0 PRJNA1008049 412 258 7.021834 18.11633172 Deinococcus 1298 Bacteria Bacteria 398 2.62e-106   NTclustered gi|470478007|ref|NR_076423.1| 68909 g394 i0 97.425 213.158914728682 233 6 90 0 24 256 536 304 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 54995 398 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
15029058 15029058 PRJNA1008049_S_NODE_4812_length_152_cov_22.040650_g4794_i0 PRJNA1008049 4812 152 22.04065 33.501788 Deinococcus 1298 Bacteria Bacteria 276 6.770000000000001e-70   NTclustered gi|470478007|ref|NR_076423.1| 68909 g4794 i0 100 113.703947368421 149 0 98 0 1 149 163 15 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 17283 276 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
20127740 20127740 PRJNA1008049_S_NODE_2776_length_171_cov_9.683099_g2758_i0 PRJNA1008049 2776 171 9.683099 16.55809929 Deinococcus 1298 Bacteria Bacteria 316 4.6e-82   NTclustered gi|1514756464|dbj|LC433574.1| 47478 g2758 i0 100 105.023391812865 171 0 100 0 1 171 83 253 Deinococcus sp. TM138 gene for 16S ribosomal RNA, partial sequence blastn 17959 316 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;