RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1005695" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1005695 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
153484 153484 PRJNA1005695_P_NODE_22361_length_317_cov_3.885246_g21509_i0 PRJNA1005695 22361 317 3.885246 12.31622982 Brachionus plicatilis 10195 Rotifera other_Eukaryota 462 1.16e-125   NTclustered gi|308156989|gb|GQ890454.1| 10195 g21509 i0 93.987 22.0315457413249 316 2 99 7 2 317 428 130 Brachionus plicatilis isolate DNA16 large subunit ribosomal RNA gene, partial sequence blastn 6984 462 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
7806041 7806041 PRJNA1005695_P_NODE_24227_length_305_cov_1.681034_g23375_i0 PRJNA1005695 24227 305 1.681034 5.1271537 Proales similis 360698 Rotifera other_Eukaryota 67.6 1.02e-6   NTclustered gi|1859640894|gb|MN970216.1| 360698 g23375 i0 71.854 3.74098360655738 302 63 96 18 11 303 8374 8086 Proales similis mitochondrion, complete genome blastn 1141 67.6 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis
7806217 7806217 PRJNA1005695_P_NODE_4507_length_753_cov_4.322059_g3774_i0 PRJNA1005695 4507 753 4.322059 32.54510427 Brachionus koreanus 1199090 Rotifera other_Eukaryota 172 5.55e-38   NTclustered gi|477541870|gb|KC603851.1| 1199090 g3774 i0 76.807 4.9203187250996 332 62 43 14 293 618 6067 5745 Brachionus sp. 'koreanus' chromosome I mitochondrion, complete sequence blastn 3705 172 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus koreanus
11631986 11631986 PRJNA1005695_P_NODE_14550_length_399_cov_26.733129_g13698_i0 PRJNA1005695 14550 399 26.733129 106.66518471 Lecane bulla 96446 Rotifera other_Eukaryota 505 2.44e-138   NTclustered gi|61200802|gb|AY829083.1| 96446 g13698 i0 89.474 31.1503759398496 399 42 100 0 1 399 444 46 Lecane bulla 28S ribosomal RNA gene, partial sequence blastn 12429 505 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
12480023 12480023 PRJNA1005695_P_NODE_5550_length_672_cov_18.712855_g4734_i0 PRJNA1005695 5550 672 18.712855 125.7503856 Eurotatoria 2816136 Rotifera other_Eukaryota 1112 0   NTclustered gi|72153731|gb|DQ089739.1| 104782 g4734 i0 96.588 41.4389880952381 674 17 99 5 1 671 1513 2183 Adineta vaga 28S ribosomal RNA gene, partial sequence blastn 27847 1118 0.994633273703041 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;