RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1005695" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1005695 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1428235 1428235 PRJNA1005695_P_NODE_24482_length_303_cov_2.426087_g23630_i0 PRJNA1005695 24482 303 2.426087 7.35104361 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.028   NTclustered gi|698803785|ref|XM_009836620.1| 112090 g23630 i0 96.774 0.102310231023102 31 1 10 0 130 160 963 993 Aphanomyces astaci hypothetical protein mRNA blastn 31 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
15456146 15456146 PRJNA1005695_P_NODE_25933_length_294_cov_2.117647_g25081_i0 PRJNA1005695 25933 294 2.117647 6.22588218 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 130 1.22e-25   NTclustered gi|2794923360|ref|XM_067881981.1| 164328 g25081 i0 80.723 4.21768707482993 166 32 56 0 80 245 274 439 Phytophthora ramorum Calmodulin (KRP23_11430), partial mRNA blastn 1240 130 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
20554728 20554728 PRJNA1005695_P_NODE_30977_length_268_cov_1.825641_g30125_i0 PRJNA1005695 30977 268 1.825641 4.89271788 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 141 5.09e-29   NTclustered gi|669161029|ref|XM_008617855.1| 1156394 g30125 i0 81.111 2.01119402985075 180 30 66 4 5 182 715 892 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 539 141 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
23105685 23105685 PRJNA1005695_P_NODE_19339_length_343_cov_2.714815_g18487_i0 PRJNA1005695 19339 343 2.714815 9.31181545 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.032   NTclustered gi|2795027578|ref|XM_067926281.1| 4785 g18487 i0 100 0.0816326530612245 28 0 8 0 174 201 135 162 Phytophthora cinnamomi myosinlike protein (IUM83_02370), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;